Addresses post-merge review findings on #290:
- Admin Rescan is the only post-v30 producer of status='blocked_inline'.
Re-add it to admin queue 'Needs review' filter chip and to
TERMINAL_BLOCKED_STATUSES in the bundle-purge job so rescan-produced
rows surface in the default operator view and bundles get TTL-swept
instead of lingering indefinitely.
- Update three doc-drift sites still referring to the pre-#290 spam
counter scope (counted blocked_inline). The counter now narrows to
blocked_llm + review_error; fix the comment in app/api/store.py,
the docstring in get_guardrails_blocked_quota_per_day(), and the
operator-facing hint rendered on /admin/server-config.
- Add positive test for _reject_inline_or_continue validation branch
(code='validation_failed', checks payload shape, no-DB-write
contract). Locks the frontend wizard's detail.checks contract.
- Tighten test_quota_disabled_with_zero — assert (200, 201) explicitly
instead of !=429 so a 500 regression no longer passes.
- _reject_inline_or_continue takes plugin_dir and lazy-computes
bundle_meta only on the security branch. Validation rejects no
longer pay for a SHA256 walk on the bundle.
- Surface store.upload.security_blocked audit-log write failures via
logger.exception instead of swallowing — that audit row is the only
forensic trace by design.
* feat(store-guardrails): admin-configurable content thresholds
Adds the flea-market content guardrail floors to the /admin/server-config
editor so operators can tune the bar without code changes. Defaults are
unchanged (60 chars description, 25 chars command, 5 distinct words, 200
chars body) — patching guardrails.* in instance.yaml or via the admin UI
overrides any of them and the next inline check picks up the new value.
src/store_guardrails/content_check.py now resolves the four floors via
helper functions (_min_desc_chars / _min_command_desc_chars /
_min_distinct_words / _min_body_chars) that read app.instance_config at
call time. Module-level _DEFAULT_* constants remain as fallbacks if
the import fails (defensive — keeps the guardrail module loadable
without the app package on its path).
app/instance_config.py grows four matching getters returning the live
value with sane defaults + integer coercion.
app/api/admin.py registers 'guardrails' as an editable section + ships
nine known-fields entries (min_description_chars,
min_command_description_chars, min_distinct_words, min_body_chars,
enabled, review_model, blocked_quota_per_day, blocked_bundle_ttl_days,
stuck_review_grace_seconds) with operator-facing hint copy explaining
what each knob does.
app/web/templates/admin_server_config.html gets a SECTION_META entry
so the section renders as 'Flea-market guardrails' with a help string
instead of a bare section ID.
app/web/router.py threads the live thresholds into /store/new and
/store/examples via a small _guardrail_thresholds() helper so the
disclosure copy, char counter, and "Why these limits" table render
the configured value (not a hardcoded 60). End-to-end smoke verified:
PATCH guardrails.min_description_chars=90 → /store/new immediately
renders "90 characters" + JS DESC_MIN=90 on the next request, no
restart required (helpers read live config per call).
* chore(store-guardrails): address PR review safe-fix findings
Code-review safe_auto findings on PR #281 (review run
20260513-100126-64052520):
- CHANGELOG: add Unreleased entry covering the new
/admin/server-config Flea-market guardrails section, the four live
threshold getters, and the route-helper rendering knobs. Required by
the project's non-negotiable "Changelog discipline" rule.
- content_check.py: narrow `except Exception` to `except ImportError`
on the four `_min_*()` resolver helpers. Surface-level TypeError /
ValueError on a malformed YAML value belongs to the
instance_config getters' own try/except — the resolvers should only
defend against the in-tree import itself failing, not silently
swallow real bugs in the getters.
- store_upload.html: refresh the stale "30-char threshold" comment to
reflect the configurable floor (default 60), and add `|default(60)`
/ `|default(25)` / `|default(5)` filters to the disclosure-copy
bindings so the upload form matches store_examples.html's
belt-and-suspenders rendering if a future route ever renders the
template without populating the `guardrail` context.
- router.py: tighten `_guardrail_thresholds()` return annotation
from bare `dict` to `dict[str, int]`.
Residual work (left for separate change after operator direction):
- Add round-trip test (PATCH guardrails -> next inline check uses
new value) — primary testing gap.
- Decide policy on `min_*=0` (currently coerced to 1 via
`max(1, int(val))`) vs treating 0 as a disable sentinel like
neighbour getters (`blocked_quota_per_day`,
`blocked_bundle_ttl_days`).
- Add POST-time integer validation for `guardrails.*` so a typo'd
YAML value (bool / string / float) errors loudly instead of
silently falling back to the default.
* test(store-guardrails): cover admin-configurable thresholds + PATCH round-trip
Closes the "primary testing gap" Vojta noted in the safe-fix commit
on PR #281 — the four new `get_guardrails_min_*` getters and the
PATCH-takes-effect-on-next-check live-config flow had no direct
coverage.
10 new tests in `tests/test_store_guardrails_admin_config.py`:
- TestGuardrailGetterDefaults (4 tests) — each new getter returns the
documented default (60 / 25 / 5 / 200) when nothing is configured.
- TestGuardrailGetterOverlay (5 tests) — overlay-driven overrides win,
string values that look numeric coerce via int(), garbage strings
fall back to default via the (TypeError, ValueError) branch, and the
`max(1, int(val))` floor pins zero/negative inputs to 1.
- TestPatchRoundTrip (1 test) — PATCH `/api/admin/server-config`
`guardrails.min_description_chars=90`, then call content_check
against a 75-char description that previously passed: must now fail
with `too_short`. Then PATCH back to 60 and verify the next check
passes again. Closes the cache-invalidation contract Vojta relies on
for the "no app restart" claim — broken without the
reset_cache() bracket in /api/admin/server-config.
The TestGuardrailGetterOverlay.test_zero_or_negative_floored_to_one
test pins the current `max(1, int(val))` policy. Vojta's safe-fix
commit explicitly left "policy on min_*=0 vs disable-sentinel" as
residual work — pinning the current behavior here ensures any future
change to use 0 as a disable sentinel must update this test (and the
reviewer sees the policy decision).
Verified: 4509 tests pass locally (4499 existing + 10 new).
* release: 0.54.2 — admin-configurable flea-market guardrail thresholds + tests
Last commit on the PR per CLAUDE.md hard rule. Patch bump (0.54.1 →
0.54.2) bundling Vojta's admin-configurable thresholds for the
flea-market content guardrail (9 knobs in /admin/server-config) plus
the test coverage closing the "primary testing gap" he punted in the
safe-fix commit.
No DB migration; defaults unchanged from PR #276 — instances that
don't set `guardrails.*` keep the original bar transparently.
---------
Co-authored-by: ZdenekSrotyr <zdenek.srotyr@keboola.com>
Co-authored-by: ZdenekSrotyr <139972147+ZdenekSrotyr@users.noreply.github.com>
* docs(spec): admin observability spec + Activity Center MVP plan
Parent spec (480 lines) + executable plan (2295 lines, 14 TDD tasks).
Covers Activity Center rebuild (/admin/activity), with /admin/sessions
and /admin/feedback deferred to follow-up plans.
Already incorporates reviewer-pass revisions across three angles
(security, production resilience, code architecture):
- _get_db import path corrected to app.auth.dependencies
- Test fixtures aligned with seeded_app / admin_user / get_system_db
- All new audit writes wrapped in try/except + logger.exception
- Filename sanitization on session uploads
- DuckDB DESC index behavior documented; upgrade window flagged
- Migration idempotency + evolved-DB test cases
- reveal_raw + shared-cache multi-worker explicitly deferred
Targets schema v40 (audit_log gains params_before, client_ip,
client_kind, correlation_id + 3 indices).
* feat(db): schema v40 — audit_log gains params_before, client_ip, client_kind, correlation_id + 3 indices
* chore(test): clean up Task 1 — drop unused import, rename stale test
* feat(audit): AuditRepository.log() accepts params_before/client_ip/client_kind/correlation_id
* test(audit): strengthen params_before assertion to round-trip JSON content
* feat(audit): AuditRepository.query() rich filters + keyset cursor pagination
* feat(sync): SyncStateRepository.list_recent() cross-table feed
* feat(audit): POST /api/sync/trigger writes audit_log row
* feat(audit): POST /api/scripts/run-due writes audit_log row
* feat(audit): POST /api/upload/sessions writes audit_log row + sanitizes filename
* feat(audit): GET /api/data/{table_id}/download writes audit_log row
* feat(activity): /api/admin/activity timeline + /health + /sync endpoints
* feat(ui): /admin/activity rebuilt — health pulse, timeline, sync grid; /activity-center → 308 redirect
BREAKING: removed demo executive-pulse / maturity-roadmap content from activity_center.html.
The page now reflects real audit_log + sync_history data.
* feat(ui): admin nav + dashboard widget point at /admin/activity
* feat(activity): recursive-audit suppression for AC read endpoints (60s window per actor+filter)
* feat(activity): emit PostHog events when integration enabled (no-op default)
* fix(audit): move v40 indices out of _SYSTEM_SCHEMA + update test_repositories to unpack query() tuple
_SYSTEM_SCHEMA CREATE INDEX on audit_log(timestamp) failed when migration
tests hand-roll a bare audit_log (id, action) without the timestamp column.
Fix: remove indices from _SYSTEM_SCHEMA; add ADD COLUMN IF NOT EXISTS guards
for timestamp and other pre-v40 columns in _v39_to_v40() so the upgrade path
is safe on any hand-rolled schema; call _v39_to_v40 explicitly in the
fresh-install (current==0) path to restore index creation there.
Also unpack the (rows, next_cursor) tuple from AuditRepository.query() in
the three TestAuditRepository tests that still treated it as a list.
* docs: CHANGELOG entry for Activity Center MVP
* chore: refresh stale module docstring in app/api/activity.py
* feat(cli): agnes admin activity — terminal access to Activity Center (timeline + health + sync)
* fix(db): _v39_to_v40 — add IF NOT EXISTS guard for 'action' column
The v39→v40 ladder step adds defensive ADD COLUMN IF NOT EXISTS for
every audit_log column so a hand-rolled bare audit_log (id only) is
safe through the ladder. 'action' was missing from the guard list,
causing CREATE INDEX idx_audit_action_time to fail on tests that
stub audit_log with only an id column (tests/test_e2e_extract.py::
TestSchemaMigration::test_migration_preserves_and_extends).
Local 6/6 schema tests + the previously-failing CI test pass.
* docs(spec): platform telemetry epic — Boss directive + Activity Monitoring plan rebased onto v40 (stacked on zs/spec-activity-center)
* feat(db): schema v41 — 7 usage_* tables for telemetry (events, summary, rollups, attribution)
* chore(db): tighten v41 — usage_session_summary.session_id NOT NULL + upgrade test asserts all 7 tables
* feat(usage): UsageAttributionRepository — replace/delete/lookup over usage_attribution_* tables
* refactor(marketplace): extract list_inner_skills/agents/commands to src/marketplace_listing.py for reuse
* feat(usage): explode plugin attribution on marketplace sync + store entity write; backfill script
* refactor(marketplace): finish src/marketplace_listing.py extraction — drop duplicate _list_inner_* + _parse_frontmatter from app/api/marketplace.py
* feat(usage): promote attribution helpers to src/usage_attribution_helpers.py; hook update_entity rename + bundle-swap; clarify best-effort semantics
* feat(usage): UsageProcessor real extraction + rollup rebuild + 10 fixture-driven tests
* fix(usage): include tool_id in event hash + executemany + rollup transaction (critical multi-tool-turn drop fix)
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
* feat(marketplace): popularity stats — invocations_30d + trend + sort=most_used|trending + Most Popular section
* feat(admin): /admin/users/<id> Sessions section — list + single-file + bulk-zip downloads (audit-logged)
* feat(usage): admin export endpoint + CLI — csv/json/parquet streaming, filters, audit-logged
* feat(usage): agnes admin ask — LLM Text-to-SQL over usage_events with SELECT-only validator (audit-logged)
* feat(usage): reprocess + prune endpoints + scheduler daily prune job + CLI
* docs: PLATFORM_SETUP.md operator playbook + HOWTO/ cookbook (5 guides + index)
Adds docs/PLATFORM_SETUP.md as a consolidated operator playbook covering
bootstrap, TLS, marketplaces (curated + flea), scheduler env vars, telemetry
extraction/export/ask/prune, privacy posture, and daily routine.
Adds docs/HOWTO/ with 5 analyst cookbook guides: first query, snapshots for
remote tables, private sessions, feedback + admin ask, and customizing skills.
Existing setup docs (QUICKSTART, DEPLOYMENT, ONBOARDING, HEADLESS_USAGE)
get a one-line cross-reference at the top pointing to PLATFORM_SETUP.md.
* docs(changelog): platform telemetry epic — usage_* foundation + surfaces + admin access + docs
Comprehensive [Unreleased] entry covering: usage_events/session_summary/
tool_daily/plugin_daily tables (v41), attribution lookup tables, backfill
script, marketplace Most Popular + invocation chips + sort, admin Sessions
section, export/ask/reprocess/prune endpoints + CLI mirrors, Activity Center
(v40), PLATFORM_SETUP.md + HOWTO/ docs, and operations notes for v41 upgrade.
* fix(security): block DuckDB read_*/http_*/glob functions in usage_ask validator + symlink escape guard in session zip + clarify mark-private semantics
* fix(admin): parquet export tempfile cleanup on COPY failure + correct processed-first sort on /admin/users/<id>/sessions
* feat(audit): close 8 production audit gaps — query (local/remote/hybrid), catalog/schema/sample, snapshot estimate/create, check-access
* feat(ui): /admin/usage summary dashboard + per-user activity tab on /admin/users/<id>
* fix(audit): cap error messages at 200 chars + audit user_activity reads + recursion guard on usage.summary
* fix(audit): catalog.list audits on error path + clean up deferred json import
* fix(ux): client_kind=cli for PAT auth + timeline empty state + email-instead-of-uuid + nav reorder + help text + loading indicators + ask doc
* feat(observability): unify /admin/activity into single page with saved views
- KPI cards (events, users, error rate, p95) clickable as quick-filters
- Faceted filter dropdowns populated from audit_log in the current window
- Sortable audit table, cursor pagination, per-row JSON side panel
- Saved views (schema v43: user_observability_views) — per-user state
- Top bar: window selector + 30s Live toggle + saved views dropdown
- /admin/scheduler-runs → 308 redirect (source=scheduler filter)
- New endpoints: /api/admin/observability/{facets,kpis,views}
* test: update activity + scheduler-runs tests for unified page
- test_admin_activity_page_renders asserts new structural anchors
- test_admin_scheduler_runs_page_admin_only asserts 308 redirect
* fix(observability): respect [hidden] on modal + side panel
CSS `display: flex` on .obs-modal beat the [hidden] attribute's UA
display:none, so the save-view modal rendered on page load and Cancel
clicks couldn't dismiss it. Gate the modal's flex layout on
:not([hidden]); add the same display:none guard prophylactically to
.obs-panel and .obs-views-panel.
* feat(observability): user enrichment in audit + interactive /admin/usage
Activity:
- /api/admin/activity now joins users for user_email + user_name per row
- User column renders "name (id-prefix)" or "email (id-prefix)" instead
of an opaque truncated UUID; falls back to id when the user record is
missing
Usage:
- /admin/usage rewritten as the same filter/group-by/search pattern as
/admin/activity. Faceted dropdowns (User / Tool / Source / Event type)
populated from usage_events; debounced free-text search across
tool_name / skill_name / subagent_type / command_name
- New endpoints /api/admin/usage/{facets,kpis,query}; the query endpoint
supports group_by in {day, username, tool_name, source, ref_id} with
sort + offset pagination, plus an ungrouped raw-events mode
- 4 KPI cards (events, distinct users, distinct tools, error rate) are
clickable quick-filters; clicking a grouped row applies the bucket as
a filter
- Old static `?window=7d|30d|all` server preload removed; all state is
client-side via since_minutes + group_by + filters in the URL
* fix(observability): clearer labels, all-column sort, drop saved views UI
- Rename page titles: "Activity" → "Server activity", "Usage" → "Tool usage"
with a one-line subtitle on each explaining what the page covers and
linking the other one. The two pages source different data (audit_log
vs usage_events) and the previous labels conflated them.
- Drop the saved-views dropdown + save modal from /admin/activity. The
modal pop-open bug was the trigger; the value wasn't there yet. The
/api/admin/observability/views CRUD + DuckDB table stay in place.
- Rename "Live (30s)" to "Auto-refresh (30s)" with a tooltip clarifying
that it's the re-fetch rate, not the time range. Time range now
labeled "Time range" instead of "Window".
- All audit-table columns are sortable (User, Source, Action, Resource,
Result added); sort is page-local with a Jinja comment explaining the
trade-off. Same for raw usage rows.
- Fix duplicate sort-arrow bug — the literal "▼" in the Time th HTML was
rendering alongside the CSS ::before arrow. Removed the literal; CSS
is the single source of truth.
* feat(observability): global Sessions browser + transcript viewer + CLI
Web:
- /admin/sessions — list every collected session JSONL across all users
with time-range, user, model, errors-only and free-text filters. Default
sort surfaces error-heavy sessions first. KPI cards (sessions, distinct
users, sessions w/ errors, tool error rate) clickable as quick-filters.
- /admin/sessions/<username>/<file> — transcript viewer rendering the
JSONL chronologically: user prompts, assistant text, tool calls (with
JSON input) and tool results (with flattened output). Errors get a red
border + chip and a "Next error" navigation button at the top.
- Admin dropdown gains a "Sessions" link.
API:
- GET /api/admin/sessions/{list,kpis,facets} — filtered cross-user reads
off usage_session_summary
- GET /api/admin/sessions/{username}/{file}/transcript — parses JSONL via
the existing services.session_pipeline.lib, returns chronological events
- GET /api/admin/sessions/{username}/{file}/download — JSONL stream, same
path-safety guards as the per-user endpoint, audit-logged
CLI:
- `agnes admin sessions list [--user X] [--errors] [--since 7d]` — table
output with `!` prefix on rows that hit a tool error
- `agnes admin sessions show <username> <file>` — transcript dump, with
`--errors` to print only the failed tool_result blocks
- `agnes admin sessions download <username> <file> [-o path]`
- `agnes admin sessions kpis` — top-level numbers
* feat(internal): expose telemetry tables to agnes query with row-level RBAC
Three new registered tables backed by system.duckdb, queryable through
the same /api/query plumbing analysts use for Keboola / BigQuery /
local sources:
agnes_sessions → usage_session_summary (filter: username)
agnes_usage → usage_events (filter: username)
agnes_audit → audit_log (filter: user_id)
RBAC is per-row, not per-table: admins see every user's rows; non-admins
see only their own. The filter is built server-side from the auth user
dict; non-admin filter values are regex-validated before SQL interpolation.
Implementation:
- new connector connectors/internal/ with access (filter+exec) + registry
(idempotent table_registry seed at startup)
- /api/query detects internal table refs and short-circuits to a CTE
wrapper that prepends "WITH agnes_x AS (SELECT * FROM <src> WHERE …),
…" then "SELECT * FROM (<user_sql>) AS _q". DuckDB cursor on the
shared system.duckdb handle — opening parallel handles / ATTACH on the
same file is blocked process-wide.
- mixing internal + BQ / registered local tables in one SELECT is
rejected (v1 limitation)
- src.rbac.can_access_table waves internal tables through for all
authenticated users; row scoping is the actual security control
- /api/v2/schema and /api/v2/sample gained internal branches; sample
intentionally skips its cache because rows are RBAC-scoped per caller
- audit row written as action='query.internal' with is_admin flag
Tests: connectors/internal/access — RBAC, filter clause, schema, CTE
wrapper coexistence with user-supplied aggregations, unsafe-username
rejection. 16/16 passing.
Motivating queries this enables:
SELECT tool_name, COUNT(*) FROM agnes_usage
WHERE is_error GROUP BY 1 ORDER BY 2 DESC
-- analyst self-introspection: which tools fail for me?
SELECT user_id, COUNT(*) FROM agnes_audit
WHERE action = 'session.transcript_view' GROUP BY 1
-- admin: who's been looking at whose session transcripts?
* feat(admin): group dropdown into 5 named sections + internal tables in /catalog
Admin dropdown gains section headers so admins can land on the right
page without re-reading the full menu:
Activity Center Server activity / Tool usage / Sessions
Users & Access Users / Groups / Resource access / Tokens
Data Tables
Agent Experience Curated Marketplaces / Flea Submissions /
Agent Setup Prompt / Agent Workspace Prompt
Server Server config
"Agent Experience" frames the curated content + prompts as one cluster
— it's all admin-controlled material that shapes what an analyst's AI
agent encounters. "Configuration" → "Server" since only one item lives
there now.
Renamed the section's first two items:
"Activity" → "Server activity" (matches page H1)
"Usage" → "Tool usage"
Also fixes /catalog visibility of the internal tables (agnes_sessions /
_usage / _audit) for non-admin users: ``app.auth.access.can_access``
short-circuits to True for resource_type='table' + an internal-table id.
Without this, non-admins saw the tables in /api/v2/catalog (which uses
the same RBAC bypass) but not on the /catalog HTML page (which calls
can_access directly, requiring a resource_grants row internal tables
don't have).
CSS for `.app-nav-menu-section`: small caps, muted, non-clickable; first
section trims top padding so the panel doesn't open with an awkward gap.
* refactor(admin): move corporate memory into Admin > Agent Experience
Memory link was the only admin-only entry in the primary nav (gated by
session.user.is_admin). Moves it into the Admin dropdown under Agent
Experience, alongside Curated Marketplaces / Flea Submissions / Prompts
— all admin-curated content that shapes what an analyst's AI agent
encounters.
Renamed the nav label to "Shared Knowledge" to match what the page
actually is (admin-curated organisational knowledge from session
verification, surfaced to agents). URL stays at /corporate-memory; the
route still gates on require_admin per the existing comment.
Side effect: primary nav (Home / Marketplace / Data Packages) is now
uniform for every authenticated user — no conditional admin-only entry.
* ui: rename admin entries to Curated Knowledge / Init Prompt / Workspace Prompt
- "Shared Knowledge" → "Curated Knowledge" (parallel with "Curated
Marketplaces" in the same Agent Experience section; "curated" tells
the admin what they do there — review + approve)
- "Agent Setup Prompt" → "Init Prompt" (matches the `agnes init` flow
it actually drives)
- "Agent Workspace Prompt" → "Workspace Prompt" (the "Agent" prefix
was redundant — every item in the section is agent-facing)
Renames page titles + H1s on /admin/agent-prompt and
/admin/workspace-prompt to match.
* refactor: rename Usage → Telemetry across user-facing surfaces
External surfaces all switch; internal Python module / file names and the
physical DB tables (usage_events, usage_session_summary, usage_tool_daily,
usage_plugin_daily) stay — renaming them would force a schema migration
+ a redo of the LLM Text-to-SQL prompt for no analyst-visible win.
Changes:
- Admin dropdown: "Tool usage" → "Telemetry"
- Page H1 / <title>: same
- URL: /admin/usage → /admin/telemetry; old URL 308-redirects
- API prefix: /api/admin/usage/* → /api/admin/telemetry/*
- CLI: primary command `agnes admin telemetry …`; `agnes admin usage` kept
as a deprecated alias so existing operator scripts keep working
- Internal data-source table id: agnes_usage → agnes_telemetry. The
registry seed now evicts any stale internal-source row whose id no
longer matches INTERNAL_TABLES, so the old `agnes_usage` row is
removed from table_registry on next app boot
- All tests + JS endpoint paths updated
* test(rbac): include auto-appended internal tables in expectations
get_accessible_tables now appends agnes_sessions / agnes_telemetry /
agnes_audit to every authenticated user's accessible-tables list so the
internal data source shows up in /catalog. The two existing rbac tests
asserted hardcoded list shapes that pre-dated the change.
Rewritten to assert "granted tables + the canonical internal-table set"
instead of literal lists, so the test stays correct if the internal
table roster changes again later.
* ui: visual dividers between admin-dropdown sections
Adds a 1px top border + 6px top margin to every section header except
the first, so the five named groups (Activity Center, Users & Access,
Data, Agent Experience, Server) read as visually separated clusters.
The header itself stays small-caps + muted as before — the border is
additive.
* ui(memory): match obs-topbar visual on /corporate-memory
The Curated Knowledge page (linked from the admin dropdown's Agent
Experience section) opened straight into the stats bar — no title,
no subtitle, no shared chrome with the other admin pages. Adds an
obs-topbar-style header at the top of .container-memory:
- H1 "Curated Knowledge"
- subtitle explaining what the page is + how AI agents pull from it
The `.ck-*` class set duplicates the inline obs-* styles from
/admin/activity etc. for this one page; promoting the obs-* class set
to style-custom.css for shared reuse is the obvious next step (4 pages
already inline the same CSS), tracked as a follow-up.
Page <title> also renamed from "Corporate Memory" → "Curated Knowledge".
* ui(tables): list Agnes internal tables in /admin/tables + group in /catalog
/admin/tables previously rendered three per-source-type listings
(BQ / Keboola / Jira) and dropped any row whose source_type didn't
match — so the agnes_sessions / agnes_telemetry / agnes_audit rows
seeded into table_registry were invisible. Adds a fourth read-only
section "Agnes internal tables" that filters source_type === 'internal'
and renders the same registry-table layout the other sections use,
with two changes:
- no Register button (these rows are seeded on every app boot from
connectors/internal/registry.py)
- Edit + Delete actions hidden (any change would be reverted on the
next start). Manage access stays so admins can still inspect.
Mode badge picks up a new mode-internal CSS class (teal accent) so the
display doesn't lie and call it "local".
In /catalog, internal tables now group under an "agnes" accordion
section (bucket="agnes" on seed) instead of falling into the catch-all
"default". Single source of truth for which tables exist; admins find
them where they expect.
* ui(tables): Agnes internal as a 4th tab next to BQ/Keboola/Jira
Previous iteration mounted the internal-table listing as a separate
standalone card under the tab strip. Reshapes it to a proper
tab-content section so admins switch between data sources via one
consistent nav (BigQuery / Keboola / Jira / Agnes internal).
- New tab button "Agnes internal" in the tab-nav.
- The listing card becomes <section id="tab-content-internal"
class="tab-content">; switchTab() already routes by id so no JS
change beyond extending the hash allowlist for direct #internal
links.
- Tab content keeps the read-only treatment from the previous commit
(no Register button, no Edit / Delete in renderRegistryListing).
* ui: rename Curated Knowledge → Curated Memory
Settles the naming back on "Curated Memory" — parallel structure with
"Curated Marketplaces" in the same Agent Experience section, and zero
rename ripple: URL (/corporate-memory), API (/api/memory/*), CLI
(agnes admin memory), and Python modules all stay on "memory" so the
admin label finally lines up with the underlying surfaces.
The "Curated" prefix still tells admins what they do on the page
(review pending → approve / mandate / reject) and reads as a sibling
of "Curated Marketplaces" right next to it in the dropdown.
Touches: admin dropdown label, page <title>, page H1. DB tables stay
on knowledge_* (already the canonical naming for the data shape).
* ui: rename "Server activity" → "Audit log"
"Audit log" is what the page actually is — server-side audit_log table
rendered with KPI cards + filter bar + sortable table. The "Server
activity" label confused the term with Claude Code session telemetry
(Telemetry page) and didn't make the source/concept clear.
Touches:
- Admin dropdown nav label
- /admin/activity page H1 + subtitle
- /admin/telemetry subtitle cross-link
- test_activity_api page-renders assertion
URL (/admin/activity) and API (/api/admin/activity/*) stay — the
"activity" name has stuck at the route layer for a year; rerouting
those would churn dashboards/bookmarks for zero analyst-visible win.
* ui(admin-nav): gray band on each section header for clearer separation
Previous iteration used a 1px top border between section labels — the
labels still blended into the items above/below at a glance. Switches
to a light gray background band per section header, extended edge-to-
edge inside the panel via negative horizontal margins. Bolder
font-weight (700) reinforces the separation; bumping the font color
isn't needed because the band itself does the work.
First section's header tucks into the panel's top border-radius so the
band reaches the corners without a gap.
* ui(catalog): rename internal-table category to "Agnes Internal"
`bucket` is what /catalog renders as the accordion category header
verbatim — "agnes" lowercase didn't read as a real category name and
got confused with a system identifier. Bumps to "Agnes Internal".
Seed re-applies on every app boot so existing rows pick up the new
bucket value via `ON CONFLICT (id) DO UPDATE`.
* ui(catalog): split Agnes Internal into its own card on /catalog
Previously the three internal tables landed inside the "Core Business
Data" card under an "Agnes Internal" accordion alongside Keboola / BQ
buckets — readers conflated system telemetry with business datasets,
and the data_stats header counter ("3 tables · ~X rows total") only
ever counted synced rows so internal tables looked invisible.
Split the catalog page into two cards:
- Core Business Data: only non-internal source_types (Keboola, BQ,
Jira). Accordions group by bucket as before. Stats counter reflects
this card's tables.
- Agnes Internal: a dedicated card with its own visual treatment
(teal accent matching the mode-internal badge in /admin/tables).
Flat list (no accordion — only 3 rows, never grows here), each
row carries the canonical `agnes query` snippet. Read-only — no
profiler click, no In-stack toggle, no sync metadata.
Route adds `internal_card` context object; template renders the new
card only when it's non-None.
* fix(rbac): hide internal tables from /admin/access + drop "my" framing
Two related cleanups for the Agnes-internal tables:
1. /admin/access (resource grants) no longer lists them. The
`can_access` check has a hardcoded internal-table bypass — security
is row-level (per-request view filter), so a table-grain
`resource_grants` row would do nothing. Surfacing them in the UI
let admins set up grants that silently no-op. Filter at the
`_table_blocks` projection so the UI tree never sees them.
2. Display names drop the analyst-perspective "my" framing:
"Agnes — my sessions" → "Agnes sessions"
"Agnes — my telemetry events" → "Agnes telemetry events"
"Agnes — my audit log" → "Agnes audit log"
The "my" only makes sense from the querying analyst's seat
(`SELECT … FROM agnes_sessions` returns *their* rows); on /admin/*
pages where admin sees / configures them across users, the
pronoun was misleading. Description text now spells out the
row-level RBAC contract explicitly.
Display names update via TableRegistryRepository.register's ON CONFLICT
UPDATE on next app boot; no manual cleanup needed.
* ui: subtitle notes about agnes_* tables on each Activity Center page
The recursive observability story — Agnes serves its own audit /
telemetry / session data through the same `agnes query` plumbing
analysts use for business data — wasn't surfaced anywhere on the
admin pages that show that data. Three pages get a one-liner with
the canonical `agnes query` snippet + the RBAC contract (analysts
see their own rows, admin sees all):
- /admin/activity (Audit log) → agnes_audit
- /admin/telemetry (Tool usage) → agnes_telemetry
- /admin/sessions → agnes_sessions
Sets up the discovery moment for admins: they're reading the page,
they see "you can query this from Claude Code", they remember it
when an analyst asks "how do I find my own failed tool calls?".
* ui(tables): explain "Show log" empty-state on /admin/tables
Cache warmup log <pre> renders with a dark background and is only
populated by the SSE stream during a Re-warm all run. Opening the
page cold + clicking Show log just revealed a black bar with no
context — admins couldn't tell what they were looking at.
Adds an inline paragraph above the <pre> explaining what the log is,
the row format, when it fills in, and where to find the historical
audit trail (/admin/activity). The actual <pre> stays empty until
SSE events arrive, but the surrounding copy carries the meaning.
* ui(tables): auto-open cache-warmup log on Re-warm all click
A Re-warm all run takes ~24s per remote BQ row. With the <details>
collapsed by default, operators saw the button disable, watched a
quiet ~24s pass, and assumed nothing had happened — the streaming
log was hidden behind a closed disclosure.
Two small JS tweaks:
- cacheWarmupRun() opens the details on click, so streamed lines
appear without an extra interaction
- cacheWarmupOnStart() hides the inline hint paragraph the moment
real log content lands, so the dark log block isn't competing
with redundant context
Hint paragraph also clarifies that only `query_mode='remote'` BQ
rows are warmed — operators with only materialized/internal tables
would see total=0 and the page would "do nothing" by spec.
* ui: trim Agnes internal copy across surfaces
Descriptions had grown to explain the extraction pipeline ("parsed
out of session JSONLs"), the underlying table ("Backed by
usage_session_summary"), the RBAC mechanic ("row-level RBAC at query
time — analysts see their own; admin sees all"), and the SQL snippet.
Every implementation detail meant another rewrite on the next iter.
Strips to one stable line per surface: what the data is, plus
"Also available locally for analysis". Mechanics live in code +
docs; the page copy says what the user needs to know.
Touched:
- connectors/internal/access.py: INTERNAL_TABLES descriptions
- activity_center.html / admin_usage.html / admin_sessions.html
subtitles
- catalog.html Agnes Internal card description + row strip
- admin_tables.html "Agnes internal" tab hint
* fix(internal): is_user_admin arity bugs + + saved-view payload cap
Round-1 code review (PR #278) caught two blocking bugs and three nits.
Blocking — both `is_user_admin(user)` (single dict arg) calls raised
TypeError. is_user_admin signature is `(user_id, conn)`. Affected:
- app/api/query.py:_run_internal_query — every POST /api/query that
references agnes_sessions / agnes_telemetry / agnes_audit blew up
with a 500. The headline analyst-facing feature of this PR was
unusable through the API.
- app/api/v2_sample.py — same shape; `GET /api/v2/sample/agnes_*`
returned 500.
Both fixed to call `is_user_admin(user.get("id"), conn)`. Added two
FastAPI-level tests in test_internal_data_source.py that go through
the TestClient — the existing unit tests on `execute_internal_query`
and `build_filter_clause` skipped the request-handler layer where the
bugs lived, which is why this landed.
Nits also closed:
- connectors/internal/access.py: `+` allowed in _USERNAME_RE /
_USER_ID_RE so RFC 5321 email local-parts (alice+test@x) resolve
correctly without hitting InternalAccessError.
- app/api/observability.py: saved-view payload capped at 64 KiB to
prevent an admin from bloating system.duckdb with a malformed save.
* fix(security): close non-admin data-leak via underlying-table refs
PR #278 R2 review surfaced a non-admin-exploitable bypass: SQL whose
string literal contains 'agnes_sessions' routed into the privileged
internal-query path, then queried the underlying physical table
(usage_session_summary / usage_events / audit_log) directly, escaping
the CTE wrapper's row filter. Two reinforcing defenses:
1. find_internal_refs() now strips single-quoted string literals
before scanning for alias names — a literal alone no longer
routes the request into the privileged code path.
2. execute_internal_query() rejects non-admin SQL that references
the underlying physical tables (usage_*, audit_log). The CTE
wrapper only scopes the agnes_* aliases; a direct FROM on the
base table — or a shadowing inner WITH that still has to read
the base table — bypasses RBAC. Block before execution with an
actionable error pointing to the agnes_* alias. Admins are
unaffected (god-mode short-circuit on the filter clause).
3. tests/test_internal_data_source.py — three new negative tests
covering literal-only matches, direct-table refs, and CTE
shadow attempts.
Also tightens usage_ask.py's SELECT-only validator: pragma_table_info,
pragma_storage_info, pragma_database_*, and duckdb_tables / columns /
views / indexes / schemas are reflection functions that leak metadata
the analyst question shouldn't reach. \bPRAGMA\b in _FORBIDDEN never
matched the function-call form (word-boundary between `A` and `_`).
* fix(security): dynamic denylist for non-admin internal queries
R3 review (PR #278) caught a wider data-leak than R2: the underlying-
physical-table guard listed only the 7 usage_* + audit_log tables,
but system.duckdb has 30+ other sensitive tables — users (emails +
ids), personal_access_tokens, resource_grants, user_groups,
user_observability_views, store_*, marketplace_*, knowledge_*, etc.
A non-admin SQL like
SELECT * FROM agnes_sessions
UNION ALL SELECT email, id, … FROM users LIMIT 1
would leak every user's row.
Replaces the hardcoded denylist with a **dynamic allowlist** —
non-admin SQL may reference ONLY the registered agnes_* aliases.
Every other table in `information_schema.tables` (main schema) is
rejected. Future migrations that add a new sensitive table are
automatically covered without re-editing this module.
Also strips SQL comments (`/* */` and `--`) before the identifier
scan so a comment-wrapped table name (`/**/users/**/`) can't slip
past the regex.
Four new negative tests pin: `users`, `personal_access_tokens`,
block-comment wrap, line-comment wrap.
Plus: per-user view-count cap (100) on /api/admin/observability/views
so an admin can't fill system.duckdb with thousands of saved views.
* release: 0.54.0 — Activity Center + Telemetry + Sessions + internal datasource
Cuts the work shipped across this PR (Activity Center build, recursive
internal data source) into a versioned release. Bumps pyproject.toml
to 0.54.0; renames the top of CHANGELOG.md from [Unreleased] to
[0.54.0] — 2026-05-12 with a header summary; opens a fresh
[Unreleased] section for the next round.
---------
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
* feat(store): flea-market upload guardrails + soft delete + JOIN-based admin queue
Adds an end-to-end guardrails pipeline for store uploads (manifest +
static-security + LLM review), persists blocked bundles for forensics,
introduces soft-delete (Archive) semantics, consolidates the legacy
/store/{id} surface into /marketplace/flea/{id}, and reworks the admin
queue so lifecycle filters read live entity visibility via LEFT JOIN
rather than a denormalized submission column.
Schema v29 → v35:
* v29 store_submissions table + store_entities.visibility_status
* v30 file_size, bundle_sha256, bundle_purged_at on submissions
* v31 reshape store_submissions (drop legacy unique on entity_id)
* v32 store_entities.archived_at/by + 'archived' visibility value
* v33 drop store_submissions.retry_count (unused)
* v34 ensure idx_store_submissions_entity exists post column-drop
* v35 broaden visibility_status enum + JOIN architecture cutover
Pipeline (src/store_guardrails/):
* Inline checks: manifest_check, static_scan, quality_check
* LLM review configurable haiku|sonnet|opus (default haiku)
* BackgroundTasks-driven async path with structured-output JSON
* Per-submitter daily quota (default 50)
* 30-day TTL purge job (POST /api/admin/run-blocked-purge)
* Bundle SHA256 + size persisted; sha256 survives purge for forensics
Visibility model:
* pending | approved | hidden | archived
* _enforce_visibility returns 404 (no leak) for non-owner non-admin
* Owner sees own non-approved entries via include_owner_id widening
* Install refused with 409 entity_not_approved when not approved
Soft-delete (DELETE /api/store/entities/{id}):
* Default = soft (visibility_status='archived'); existing installs
keep getting served the bundle so users don't lose the plugin
* ?hard=true admin-only: drops bundle + cascades user_store_installs
* Hard-delete preserves entity_id on submission as tombstone so
audit_log linkage survives for the activity timeline
Admin queue lifecycle (the JOIN refactor):
* Verdict (store_submissions.status) is immutable forensic record
* Lifecycle (store_entities.visibility_status) is live state
* /admin/store/submissions Archived chip translates to
`e.visibility_status='archived'` via LEFT JOIN — any path that
flips visibility surfaces in the queue immediately
* Detail page renders Status (verdict) and Entity lifecycle side by
side so admins see "approved at review, now archived" at a glance
URL consolidation:
* /store/{id} deleted (no redirect, stale bookmarks 404)
* /marketplace/flea/{id} is the canonical detail surface
* Three in-tree callers (upload-success, my-stack card, store
listing card) updated to point at the new URL
* Quarantine banner extracted to _quarantine_banner.html partial,
self-guarded, included from both flea detail templates
* Banner JS auto-refreshes when the verdict lands by polling
/api/marketplace/flea/{id}/detail (visibility_status +
submission_status — the latter is needed because blocked_llm
keeps the entity at visibility_status='pending')
Audit log resource format:
* runner.py emits prefixed `store_submission:{id}` (post-fix)
* Detail-page timeline query handles three patterns: prefixed
submission, helper-emitted `store_entity:{sub_id}`, and bare-id
legacy rows — all surface in the activity timeline
UX fixes:
* Owner sees Under review / Quarantined / Hidden banner with status
* Install button gray-disabled (not blue) when non-approved
* Owner cannot delete quarantined entries (403); admin can
* Admin queue: filter chips, sortable columns, paging, page-size
* Auto-refresh queue every 5s while pending rows are visible
* Store upload page file picker no longer opens twice (label →
input default action collided with explicit JS handler)
Tests: 168 passed across the guardrails suites (admin submissions,
store API, inline / LLM / purge guardrails, store repositories,
marketplace filter, schema version). New regression coverage
includes: archive surfaces via JOIN even when API path is bypassed;
deleted submission renders activity timeline (tombstone); flea
detail surfaces submission_status only for owner/admin; detail page
renders Entity lifecycle row; audit log resource format covers both
helper and runner paths.
* fix(store-guardrails): PR #233 follow-up — prompt injection, atomic PUT, BG race, schema, reaper, sort whitelist
Addresses 9 of the 23 findings from the PR #233 review (spec at
docs/superpowers/specs/2026-05-09-pr233-guardrails-fixes-spec.md).
Merge-gate items #1-#6 plus high-value mediums #7, #9-#12, #23.
Architectural items (#8 enum split, #14 factory) and pure
maintainability (#15-#22) deferred to follow-ups.
Security:
* #1 prompt injection — SYSTEM_PROMPT now passed via the SDK's
dedicated system= parameter; bundle wrapped in <bundle>...</bundle>
sentinels declared data-only by the system prompt; literal
sentinel strings in user content are escaped so an adversarial
README can't forge a close tag.
* #6 static scan honesty — module docstring + admin copy + docs
declare static scan as signal not gate; .md/.txt/.rst/.html/.json/
.yaml/.yml/.toml skipped to avoid false positives on prose.
AST mode for Python deferred (separate flag, FP comparison work).
Correctness:
* #2 PUT atomicity — bundles bake into plugin.staging-<rand>/
alongside live, atomic-rename on success; failed checks leave
live tree byte-for-byte intact.
* #3 BG-task race — set_visibility_if_pending guards verdict flips
to the (pending, hidden) review window; admin archives during
review survive; skipped flips audit-logged.
* #4 v35 NOT NULL/DEFAULT — schema v35→v36 re-applies them on
store_entities.visibility_status. CHECK constraint enforced
application-side (DuckDB ADD CHECK on existing column unsupported).
* #7 stuck-review reaper — reap_stuck_llm_reviews flips pending_llm
rows older than guardrails.stuck_review_grace_seconds (default
1800) to review_error. Scheduler runs every 15 min via new
/api/admin/run-reap-stuck-reviews. Set knob to 0 to disable.
* #9 quota counter — count_blocked_for_submitter_since now counts
blocked_inline + blocked_llm + review_error so a submitter
triggering only LLM-blocked verdicts is bounded.
* #10 missing risk_level — surfaces as review_error with
error='missing_risk_level' instead of silently defaulting to
'medium' (which looked like a model-decided block).
* #11 archived_at clear — set_visibility nulls archived_at +
archived_by when transitioning out of 'archived' so a future
read doesn't show stale archive forensics on an approved row.
Maintainability:
* #12 FSM doc comment — accurate insert/transition/lifecycle
description in src/db.py near store_submissions schema.
* #23 sort-key whitelist — admin queue rejects unknown sort keys
with 400 invalid_sort_key; substring-replace footgun removed.
Deferred (separate PRs):
* #5 quota race — proper fix requires asyncio.Lock spanning the
full pipeline; threading.Lock blocks event loop, DuckDB MVCC
doesn't help. API-level slowapi bounds worst case for now.
* #6 part 3 (AST static scan), #8 (enum split), #13 (import
bundle docs), #14 (factory consolidation), #15-#22 (maint).
Tests:
* New: tests/test_store_guardrails_prompt_injection.py (corpus +
trust-boundary invariants), tests/test_store_put_atomic.py,
tests/test_store_guardrails_reaper.py.
* Extended: test_store_guardrails_llm.py (system param, missing
risk_level, BG race), test_admin_store_submissions.py (quota
counter widening, sort whitelist 400), test_store_repositories.py
(un-archive metadata clear), test_db_schema_version.py (v36).
* Full suite: 3738 passed; 17 pre-existing baseline failures
unchanged (db migration tests, cli binary rename, catalog export,
user mgmt v5 backfill — confirmed by stash + rerun on clean tree).
* Extract session pipeline framework, refactor verification, add UsageProcessor skeleton
Pluggable framework under services/session_pipeline/ (contract + lib + per-processor
runner) so multiple processors can read /data/user_sessions/<key>/*.jsonl on their
own cadence with full failure isolation. Verification flow becomes the first plugin;
a no-op UsageProcessor reserves the second slot pending a separate brainstorm on
extraction logic + storage shape.
Schema v28→v29: rename session_extraction_state → session_processor_state with
composite PK (processor_name, session_file). Existing rows copied over with
processor_name='verification'; legacy table dropped. Migration is idempotent and
no-ops the copy step on fresh installs that came up at the new schema.
Endpoint: /api/admin/run-verification-detector replaced by parametrized
/api/admin/run-session-processor?processor=<name>. Audit action format follows.
Scheduler JOBS: verification-detector entry split into session-processor:verification
+ session-processor:usage. SCHEDULER_VERIFICATION_DETECTOR_INTERVAL retained for
operator compatibility (drives both cadence and health-check grace window);
SCHEDULER_USAGE_PROCESSOR_INTERVAL added.
* Address PR #232 review: scan dead branch + per-processor lock
- `SessionProcessorStateRepository.scan_unprocessed_for` dead else: both
branches surfaced every jsonl, the SELECT was unused, runner MD5-rehashed
every stable session per tick. Replaced with an mtime precheck — stable
sessions (mtime <= processed_at) are filtered at scan; modified files
still surface for the runner's authoritative `file_hash` invalidation.
Naive-local comparison matches the existing health-check idiom (DuckDB
TIMESTAMP strips tz on storage).
- Per-processor advisory lock around `_run_processor` in
`/api/admin/run-session-processor`. Scheduler tick + manual admin POST
could otherwise both run, both call create_evidence on overlapping
detections, and accumulate duplicate verification_evidence rows (the
dedup short-circuit only covers create+contradiction, not evidence per
ADR Decision 3). Non-blocking acquire → 409 Conflict on concurrent
invocation; release in finally so a runner exception doesn't wedge the
processor.
Tests: two new scan unit tests (mtime filter + post-mark mtime bump), 409
endpoint test, lock-released-on-exception test. Two existing tests updated
for the new "filtered at scan" stat shape (previously asserted skipped == 1,
now scanned == 0).
* Address PR #232 review #2: parallel scheduler tick + last_run on terminal state
Two pre-existing scaffold bugs in services/scheduler/__main__.py amplified
by adding more session-pipeline jobs:
1. Serial for-loop over jobs with synchronous httpx.post(timeout=900) — a
10-minute verification run blocked every other job (data-refresh,
health-check, usage, corporate-memory) for the whole window. The PR's
stated isolation guarantee held inside the runner but broke at the
scheduler dispatch layer.
2. last_run advanced only when _call_api returned True. Permanent-failure
jobs hot-looped on every tick (30s) instead of cadence (15min).
Fix: ThreadPoolExecutor.submit per due job + per-job in_flight set so a
long-running job can't be re-launched on subsequent ticks. last_run
advances unconditionally in finally; errors still surface via _call_api
logging + audit_log on the receiving side.
_run_job extracted to module-level for unit testing. New tests:
- TestRunJobBookkeeping: advances on success / failure / unhandled raise
- TestRunLoopParallelism: in_flight protection prevents duplicate
launches across ticks for a single slow job
---------
Co-authored-by: Minas Arustamyan <arustamyan.minas@gmail.com>
## Summary
Brings the Keboola connector to feature parity with the legacy internal data-analyst's per-table sync strategies. Closes the four documented gaps from the spec branch (`zs/keboola-connector-specs`):
- **Typed parquet** in the legacy SDK extraction path — column types from Keboola Storage metadata (provider cascade `user > ai-metadata-enrichment > keboola.snowflake-transformation`) survive the CSV → parquet roundtrip; invalid date strings (`'0000-00-00'`) and invalid numeric strings (`'Non-Manager'`) become NULL while keeping the column's typed schema. Pre-fix everything was VARCHAR.
- **Incremental sync** via Storage API `changedSince` — opt-in per table; pulls only delta rows, merges into the existing parquet by `primary_key` (drop_duplicates with keep='last'). Cuts daily extraction from O(full table) to O(delta).
- **Partitioned sync** — flat per-partition layout `data/<table>/<key>.parquet` (e.g. `2026_05.parquet`), per-affected-partition merge for daily updates, chunked initial load with 1-day overlap and 2-empty-chunk stop heuristic.
- **`where_filters`** — server-side row filter with date placeholders (`{{today}}`, `{{last_3_months}}`, `{{start_of_3_months_ago}}`, etc.) resolved at sync time. Force the SDK path; reject `incremental + where_filters` combination at API layer (changedSince already filters temporally).
## Architecture
- **Schema migration v25 → v26**: 7 new columns on `table_registry`. Existing `sync_strategy` column reused (pre-v26 it was inert catalog metadata; post-v26 the extractor dispatches off it).
- **Per-table dispatcher** in `extractor.run()` routes to one of `_extract_via_extension` (full_refresh + extension), `_extract_via_legacy` (full_refresh + filters or extension fallback), `extract_incremental`, or `extract_partitioned`.
- **API conflict policy**: `incremental + where_filters` → 422; `partitioned + query_mode='remote'` → 422; `partitioned ⇒ partition_by required`.
- **Admin UI**: third "Direct extract (Storage API)" radio in the Keboola Register / Edit modals, alongside existing "Whole table (extension)" and "Custom SQL". When selected, exposes a v26 sync-strategy panel with conditional fields per strategy.
## Test plan
- [x] **Unit + module** — 134 v26 tests covering migration, repo, parquet_io, where_filters, incremental (compute_changed_since + merge_parquet + extract_incremental E2E), partitioned (key derivation + merge_partition + chunked windows + extract_partitioned E2E), extractor dispatcher, admin API validators, PUT field clearing, registry-shape → dispatcher bridge
- [x] **HTML form structure** — all v26 inputs + visibility classes + JS payload fields verified in rendered template
- [x] **Real Keboola roundtrip** — registered a small test table as `sync_strategy='incremental'` against a test Storage project, triggered two syncs:
- Sync 1: `changedSince=None` → full pull → 9 rows typed parquet
- Sync 2: `changedSince=last_sync - 1d window` → 9 delta rows merged with 9 existing → 9 after dedup on primary_key (PK merge confirmed)
- [x] **Browser UX** — agent-browser session against a local uvicorn: login → admin/tables → register modal → switch radios → verify field visibility per strategy → submit → edit existing row → switch to Direct/Incremental → save → confirm DB persistence
- [x] **Regression** — no regressions in the broader 3252-test suite (3 pre-v26 tests updated for the deprecation-marker removal + schema-version bump; 2 pre-existing environment-sensitive test failures unrelated to this change)
## Bugs caught + fixed during E2E
The browser + real-Keboola roundtrip exposed four bugs the unit tests missed:
1. **JS visibility race** — two competing `forEach` loops set `display=''` then `display='none'` on form elements sharing `kb-strategy-incremental kb-strategy-partitioned` classes (window_days + max_history_days are reused across strategies). Fix: single-pass selector with class-based visibility resolver.
2. **PUT cannot clear field** — pre-v26 `updates = {k: v ... if v is not None}` collapsed "omitted from body" and "sent as null" into the same case, so admin couldn't switch a partitioned row back to full_refresh and have stale `partition_by` clear. Fix: `model_dump(exclude_unset=True)`.
3. **Subprocess DB lock conflict** — `_read_last_sync` reopened `system.duckdb` while the parent server held the write lock (subprocess contract at `app/api/sync.py:_run_sync` line 260). Fix: parent injects `__last_sync__` into table_config before subprocess spawn.
4. **Wrong KBC table_id** — `extract_incremental` / `extract_partitioned` built the Storage API table_id from the registry row's slugified `id` (`circle_inc`) instead of `bucket.source_table` (`in.c-finance.circle`), producing 404s. Fix: prefer `bucket+source_table`; fall back to `id` only when bucket empty.
## Operator notes
- Existing tables stay on `full_refresh` after migration; admins opt individual tables in via `agnes admin register-table --sync-strategy ...`, the Keboola Edit modal, or `POST/PUT /api/admin/registry`.
- `merge_parquet` and `merge_partition` use `pd.concat + drop_duplicates`, loading both existing and delta into pandas RAM. For tables in the multi-million-row range this may OOM — switch to `partitioned` strategy for those (per-partition merge keeps memory bounded). Documented in `### Internal` of the changelog entry.
- Date placeholders are resolved at **sync time**, not register time — a typo'd `{{lasst_week}}` is accepted at register and surfaces only when the next sync runs. By design (rolling windows need late-binding).
## Spec source
The four corresponding plans on the `zs/keboola-connector-specs` branch under `docs/superpowers/plans/2026-05-07-0[1-4]-*.md` capture the design rationale and link back to internal repo references for each subsystem.
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## Summary
- Catalog enrichment for `query_mode='remote'` rows: `rows`, `size_bytes`, `partition_by`, `clustered_by` per table (BQ + Keboola providers).
- `/api/v2/schema/{id}` cache miss: 2 BQ jobs → 1 (-50%) via shared `fetch_bq_columns_full`.
- All four catalog/schema/sample/metadata caches flush on registry change; single-row re-warm scheduled.
- Automatic cache warmup at server startup (bounded concurrency, opt-out via `AGNES_SKIP_CACHE_WARMUP=1`).
- SSE-driven freshness toolbar on `/admin/tables` with progress bar, log, and per-row badge.
- New admin doc `docs/admin/query-modes.md` — single source of truth on `local` / `remote` / `materialized` choice.
Closes#155.
Closes#156.
## Test plan
- [x] 65+ targeted tests pass across 11 new test modules + 3 modified ones.
- [x] No DB migration; no wire-break; `MIN_COMPAT_CLI_VERSION` unchanged.
- [ ] Reviewer: register a remote BQ table via `/admin/tables`, observe the toolbar populates within ~2 s and the per-row badge transitions warming → fresh.
- [ ] Reviewer: trigger `Re-warm all`, verify SSE log scrolls and `cacheWarmupBar` progresses.
- [ ] Reviewer: edit a registered row's bucket, verify `agnes schema <id>` returns updated columns immediately (no 1-hour staleness).
- [ ] Reviewer: confirm `agnes admin register-table --query-mode remote` prints the new IAM-smoke-check hint.
## Notable design decisions
- BigQuery `INFORMATION_SCHEMA.TABLE_STORAGE` is the only valid scope for size+rows (verified live 2026-05-07; dataset-scoped doesn't exist). Region resolved from `instance.yaml.data_source.bigquery.location` → `bq.client().get_dataset(...)` → fall back to legacy `__TABLES__`.
- VIEW handling: TABLE_STORAGE returns no rows for views, fall through to `__TABLES__` (also empty) → `TableMetadata(rows=None, size_bytes=None, partition_by=..., clustered_by=...)`. Null size signals analyst Claude to apply existing CLAUDE.md guidance.
- `size_bytes` is `active_logical_bytes + long_term_logical_bytes` — full BQ scan reads both; reporting only active undercounts aged partitioned tables.
- Source-agnostic provider seam: per-source `connectors/<source>/metadata.py:fetch(MetadataRequest)`; dispatcher in `app/api/v2_catalog.py:_metadata_provider_for` lazily imports per source_type so a Keboola-only deployment doesn't pay the BQ-extension import cost.
- Warmup non-blocking: FastAPI `lifespan` schedules `asyncio.create_task(_warm_catalog_caches_bg)` before `yield`. Per-row failures isolated.
## Out of scope
- Profile / column histograms / dimension cardinality for remote tables (separate issue).
- Onboarding nudge ("you have 0 remote tables, consider registering some BQ ones") — separate UX call.
- Provider plug-in registration via entry-points (the dispatch table is a hardcoded if-tree today; one line per future source).
## Release
Bumps `pyproject.toml` 0.46.1 → 0.47.0 (main shipped 0.46.0 + 0.46.1 during this PR — see commit `d98976ec`). New CHANGELOG section under `## [0.47.0] — 2026-05-07`.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
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* fix: cutover regressions + parallel Keboola legacy fallback
Bundled fixes from a fresh-deploy run on a Keboola Storage backend with
the block-shared-snowflake-access feature flag — DuckDB Keboola
extension's per-table scan can't access bucket schemas, so the legacy
kbcstorage Storage-API client is the only working path.
CUTOVER REGRESSIONS
- agnes pull hash mismatch on every Keboola local-mode table —
src/orchestrator.py:_update_sync_state stored md5(mtime+size)[:12]
while the CLI compares against full 32-char content MD5. Now stores
the same content MD5 the materialized SQL path already used.
- Trailing-slash sanitization in connectors/keboola/access.py and
extractor.py — DuckDB Keboola extension's ATTACH fails when the URL
ends in / (canonical form).
- src/profiler.py:TableInfo.description becomes optional — two call
sites instantiated without it, crashing the profiler pass.
- scripts/ops/agnes-auto-upgrade.sh: chown on UID change — older images
ran as root, current runs as agnes (uid 999). Reads target uid:gid
from /etc/passwd inside the new image and chowns ${STATE_DIR},
/data/extracts, /data/analytics when the digest moves.
- POST /api/sync/trigger is now singleton per process — two
near-simultaneous trigger calls each forked an extractor subprocess,
fought for extract.duckdb's file lock, starved uvicorn, flipped the
container to unhealthy. Trigger now returns 409
(sync_already_in_progress) when held; _run_sync acquires non-blocking.
PARALLEL LEGACY FALLBACK
- Process pool fan-out for the _extract_via_legacy queue (default 8
workers, override via AGNES_KEBOOLA_PARALLELISM). Process pool, not
thread pool, because connectors/keboola/client.py:export_table does
os.chdir(temp_dir) — process-global, so threads raced and slice files
landed in the wrong directory ("[Errno 2] No such file or directory:
'<job_id>.csv_X_Y_Z.csv'").
- Extractor subprocess timeout 1800s -> 3600s (configurable via
AGNES_EXTRACTOR_TIMEOUT_SEC). 28+ tables × multi-minute Keboola export
jobs need the headroom on telemetry-class projects.
- Process group cleanup on timeout — Popen(start_new_session=True) puts
the extractor in its own group. On timeout the parent SIGTERMs the
group (10s grace) then SIGKILLs stragglers. Without this, the pool
workers were reparented to PID 1 and continued holding open Keboola
Storage export jobs. Inline extractor script also installs a SIGTERM
-> sys.exit(143) handler so the with ProcessPoolExecutor(...) block
__exit__ runs cleanly.
Tests: existing tests that patched subprocess.run updated to patch
subprocess.Popen with a _FakePopen stand-in (same exit-code-injection
contract). Two tests that exercised the parallel path forced
AGNES_KEBOOLA_PARALLELISM=1 to keep mocks alive (mocks don't ride into
ProcessPoolExecutor subprocesses).
Squashed onto current main (was 7 commits + multi-commit CHANGELOG +
agnes-auto-upgrade.sh conflicts; squash avoids per-commit conflict
resolution against main's flat-mount STATE_DIR refactor and 0.38.0
release cut).
* feat(keboola): Storage API direct extract path; drop extension data path
The DuckDB Keboola extension's COPY routes through Keboola QueryService,
which is unreliable on linked-bucket projects (extension v0.1.6 fixes
that case but isn't yet in the community CDN, and pre-fix any project
with the block-shared-snowflake-access feature flag couldn't see bucket
schemas at all). Move the extract path off the extension entirely and
talk to the Storage API directly via signed-URL download — works on any
project, regardless of extension state.
connectors/keboola/storage_api.py (NEW)
Lightweight client built on requests.Session. Three endpoints:
- POST /v2/storage/tables/{id}/export-async (kicks off job)
- GET /v2/storage/jobs/{id} (poll until done)
- GET /v2/storage/files/{id}?federationToken=1 (signed URL detail)
- GET <signed_url> (download bytes)
Supports sliced exports (manifest + per-slice signed URLs) and gzipped
payloads. ExportFilter dataclass mirrors the Keboola filter spec
(whereFilters / columns / changedSince / limit) and handles JSON
round-trip with the registry's source_query column. Token redaction
in error messages. Bounded exponential backoff on job polling.
No cloud-SDK dependency on the data path; thread-safe.
connectors/keboola/extractor.py
- materialize_query() rewritten: takes bucket/source_table/source_query
(JSON filter spec), exports via KeboolaStorageClient, converts CSV
to parquet via DuckDB, atomic os.replace. Same return shape so
sync.py downstream code stays uniform with the BQ branch.
- _extract_via_legacy() also moved to Storage API direct (kept the
name for caller compatibility with _legacy_worker / the parallel
batch extractor). Per-call temp directories — no os.chdir, threads
don't race.
app/api/sync.py
_run_materialized_pass for source_type='keboola' rows now constructs a
KeboolaStorageClient (replaces KeboolaAccess) and passes
bucket/source_table/source_query to materialize_query. Reuses one
client across rows for HTTP keep-alive. Sources keboola URL from env
too (KEBOOLA_STACK_URL) when instance.yaml doesn't have stack_url
configured.
cli/commands/admin.py
discover-and-register defaults Keboola rows to query_mode='materialized'
(NULL source_query = full table), matching the v26 migration's
unification of the local/materialized split for Keboola. BigQuery and
Jira keep their per-source defaults.
src/db.py
Schema bump 25 → 26. Migration: UPDATE table_registry SET
query_mode='materialized' WHERE source_type='keboola' AND
query_mode='local'. NULL source_query on those rows means "full table
export" — same effective behavior the local mode provided, but now
via Storage API instead of the extension.
pyproject.toml
kbcstorage dep stays (admin-side bucket/table list still uses the
SDK in app/api/admin.py / connectors/keboola/client.py); only the
data path is migrated off the SDK. Comment updated to reflect the
new boundary.
tests
- test_keboola_storage_api.py (NEW, 19 tests): ExportFilter parsing,
HTTP client (token redaction, retry logic, polling), download_file
(single, gzipped, sliced), end-to-end export_table_to_csv.
- test_keboola_materialize.py rewritten: mocks KeboolaStorageClient
instead of FakeAccess; same atomic-write + zero-rows + unsafe-id
contracts.
- test_sync_trigger_keboola_materialized.py: registry rows now carry
bucket+source_table+JSON-shape source_query.
114+ Keboola-impacted tests green locally.
* test: schema version assertion bumped to 26 alongside the keboola query_mode migration
* fix(keboola): cutover hot-patches surfaced on agnes-dev
Five small fixes that were applied as in-container hot-patches during
agnes-dev cutover and need to be on the source-of-truth image so a fresh
upgrade does not undo them.
- app/api/sync.py: auto-discover gate considers the WHOLE registry (any
source, any mode), not just rows where source matches and query_mode
is local. After the v25→v26 keboola materialized migration an
instance can have 30 materialized rows and zero local rows; the
previous gate kept re-firing _discover_and_register_tables every
scheduler tick, creating duplicate auto-discovered rows with the
wrong bucket prefix every time.
- app/api/admin.py: _discover_and_register_tables reassembles the
bucket as <stage>.<bucket-id> (e.g. in.c-finance) instead of
dropping the stage prefix; default query_mode for keboola is now
materialized (the v26 contract); validator allows NULL source_query
for keboola materialized rows (full-table export via Storage API
export-async, no SQL needed).
- cli/commands/admin.py: register-table mirrors the server validator
(NULL source_query allowed for source_type=keboola); --bucket help
text generalized to cover both BQ dataset and Keboola bucket id.
- connectors/keboola/extractor.py: max_line_size=64 MiB on
read_csv_auto so embedded JSON / SQL cells (kbc_component_configuration
in particular) do not trip the default 2 MiB ceiling.
- connectors/keboola/storage_api.py: GCP backend support — when the
Storage API returns a manifest whose slice URLs are gs://
references with a gcsCredentials block, rewrite to the JSON REST
download endpoint and authenticate with the issued OAuth bearer
token; redact tokens in any surfaced error string.
* test: align with new keboola materialized + auto-discover-gate contracts
- test_admin_keboola_materialized: rename
test_register_keboola_materialized_rejects_missing_source_query →
test_register_keboola_materialized_accepts_missing_source_query.
v25→v26 introduced 'keboola materialized with NULL source_query
means full-table export via Storage API export-async' as the
default registration shape; the rejection case is no longer the
contract.
- test_sync_filter: add list_all() to _StubRegistry. The auto-discover
gate in _run_sync now keys off the WHOLE registry (not just local
rows) so materialized-only Keboola instances do not re-trigger
discovery on every tick.
* feat(keboola): native parquet export — skip CSV roundtrip
Storage API export-async accepts fileType={csv,parquet}. Switching the
materialized sync to parquet eliminates the CSV → DuckDB COPY → parquet
roundtrip that pinned a single uvicorn worker over 4 GiB on multi-GB
tables (read_csv with all_varchar + max_line_size=64MB has to
materialize the whole CSV in memory before COPY can stream out a
parquet). Snowflake UNLOAD on Keboola's side already produces typed,
self-contained parquet files; the extractor downloads them and renames
into place.
Two cases:
- **Single-file** export (small table): file_info.url points at one
signed URL; download_file streams chunks straight to .parquet.tmp
and we're done. No DuckDB.
- **Sliced** export (Snowflake UNLOAD respects MAX_FILE_SIZE — 16 MiB
default — so anything larger arrives as N parquet slices): each
slice is a complete parquet file with its own footer; naive concat
would corrupt them. download_file_slices keeps the slices as
separate files in a tempdir, then DuckDB COPY (SELECT * FROM
read_parquet([slice0, slice1, ...])) merges them into one
consolidated parquet. DuckDB streams row groups during this — peak
memory bounded to one row group (~1 MiB) regardless of source size.
The legacy CSV path stays as the explicit opt-in via source_query=
'{"file_type":"csv"}' for projects whose backend can't UNLOAD
parquet (none known today; cheap escape hatch). Backward-compat alias
KeboolaStorageClient.export_table_to_csv kept.
Also fixes a latent bug in download_file's gzip detection: previous
heuristic flagged any unencrypted file as gzipped, which would have
corrupted parquet downloads at gunzip time. Name-suffix-only now.
* fix: tempdir leak cleanup, every 0m schedule, /sync/trigger body shapes
Three small self-contained fixes uncovered during agnes-dev cutover.
- connectors/keboola/extractor.py: tempfile.TemporaryDirectory now uses
ignore_cleanup_errors=True so a worker death mid-write doesn't leave
multi-GiB stale slice trees on the boot disk. (12 GiB seen after a
disk-full crash where TemporaryDirectory's own cleanup also raised
and got swallowed.)
- src/scheduler.py: is_valid_schedule accepts 'every 0m' (interval=0
= always due). Force-resync of an errored row no longer requires
waiting out the default 'every 1h' interval — admin can flip the
schedule, trigger, then flip back.
- app/api/sync.py: POST /api/sync/trigger accepts both ['table_id']
(legacy bare-array body) and {'tables': ['table_id']} (matches the
response payload shape, more discoverable for clients building
requests by hand). Malformed bodies return 422 with a structured
detail; null/missing means 'sync everything' as before.
Tests cover: tempdir cleanup on raise (sliced parquet path),
is_valid_schedule + is_table_due 'every 0m' acceptance, and trigger
body parametrized matrix (8 valid shapes + 6 rejection cases).
* fix: targeted-trigger filter in materialized pass + auto-upgrade defer
Two operational gaps observed during agnes-dev cutover, in the same
sync-routing area.
- _run_materialized_pass now takes a 'tables' arg and skips rows not in
the target set with reason='not_in_target'. POST /api/sync/trigger
with a body of tables previously only scoped the legacy extractor
subprocess — the materialized pass kept iterating every due
materialized row, so an admin asking to re-sync kbc_job re-ran
every other due materialized row alongside it. Match on registry id
OR name (admins commonly pass either form). tables=None preserves
the no-filter behavior.
- New GET /api/sync/status (public, no auth) returns {locked: bool}
off _sync_lock.locked(). agnes-auto-upgrade.sh probes this before
docker compose up -d and exits 0 with a 'deferred recreate' log
line if a sync is in flight — the next 5-min cron tick retries.
Pre-fix, an auto-upgrade triggered mid-sync would recreate the
uvicorn worker and kill the in-flight extractor / Snowflake-UNLOAD
download (observed when kbc_job's first 7-day retry got SIGKILLed).
Connection failures in the probe fall through to the upgrade —
being stuck on a wedged image is worse than interrupting a
hypothetical sync.
* fix: auto-discover protects admin overrides + surfaces drift
Two real-world incidents on agnes-dev drove this:
1. kbc_job was registered manually with the correct
(in.c-kbc_telemetry, kbc_job) coordinates. A naive auto-discover
re-run would have inserted a SECOND kbc_job row at the slugified
id 'in_c-keboola-storage_kbc_job' (where Keboola's discovery
places it) — and that row's Storage API export-async 404s.
2. An earlier auto-discover bug stripped the stage prefix from
bucket ids ('c-finance' instead of 'in.c-finance'), inserting
137 rows whose syncs all failed.
Fix:
- _discover_and_register_tables now builds a plan first
(_build_keboola_discovery_plan) classifying each discovered table
into one of new / existing_match / existing_drift / invalid, then
executes only the 'new' bucket. Drift rows are reported with both
sides of the disagreement plus drift_kind:
- same_id_diff_coords: registry has the same id but different
bucket / source_table (admin migrated coords inline).
- name_collision: discovery's slugified id differs from any
registry id, but the discovered .name matches an existing row's
.name (case-insensitive). Catches the kbc_job case.
- Bucket detection now prefers the API's authoritative bucket_id
field (separate field on the Keboola tables.list response,
normalised by KeboolaClient.discover_all_tables). Falls back to
id-string parsing only when bucket_id is missing (older fallback
path inside discover_all_tables).
- Endpoint POST /api/admin/discover-and-register?dry_run=true
returns the plan without writing — would_register, drift,
invalid lists. Lets an operator audit before merging discovery
with a registry that has admin overrides.
Removed 'every 0m' from test_register_request_rejects_malformed_sync_schedule
— the runtime started accepting it in the previous commit (force-resync
override) and the validator follows suit.
* feat(keboola): AGNES_TEMP_DIR routes tempfiles off overlayfs /tmp
The container's /tmp lives on the boot disk's overlayfs (29 GiB on
agnes-dev, shared with /var). Snowflake UNLOAD of a wide table writes
slices into per-call /tmp tempdirs that fill multi-GiB / many-slice
exports long before the dedicated data disk fills. agnes-dev hit
100% boot-disk while the 20 GiB data disk had 15 GiB free.
connectors.keboola.storage_api.get_temp_root() reads AGNES_TEMP_DIR;
mkdirs the target on first use; unset / empty / unwritable falls
back to None (system tempdir, OSS-pre-fix behaviour). Both
materialize_query (parquet path) and _extract_via_legacy (CSV
fallback) and the sliced-CSV concat path in storage_api use the
helper now.
docker-compose.yml defaults AGNES_TEMP_DIR=/data/tmp on app, scheduler,
and extract services. The data volume is the dedicated disk in
production layouts and a plain docker volume in single-disk
dev/laptop setups — same blast radius as the previous /tmp default
on the latter, no regression.
1. instance.yaml overlay path now matches read site under STATE_DIR.
Three sites updated:
- app/api/admin.py:1005 (server-config endpoint writer)
- app/api/admin.py:2610 (configure endpoint writer)
- app/instance_config.py:106 (overlay reader)
All three now go through _state_dir() so under flat-mount layout
(STATE_DIR=/data-state) the irreplaceable instance.yaml overlay
lands on the state disk (sdc) instead of the regenerable data
disk (sdb). Without this fix, .env_overlay correctly went to the
state disk while instance.yaml went to the data disk — config
would be lost if an operator wiped sdb.
2. Strip customer-specific tokens from OSS repo per CLAUDE.md
vendor-agnostic rule:
- docker-compose.host-mount.yml: 'a deployer (Groupon FoundryAI)'
→ 'a deployer in production'
- docker-compose.flat-mount.yml: 'caused 2026-05-05 in the
Groupon FoundryAI deployment' → generic 'production failure
mode'
- docs/state-dir.md: rewrote the incident reference to describe
the failure mode abstractly without naming the deployment;
updated the recommendation table to say 'shadow-mount class'
instead of dating the specific incident.
3. Updated docs/state-dir.md 'What reads STATE_DIR' to list all
read/write sites including the three migrated in this round
(admin.py, instance_config.py, marketplaces.py).
ANALYSIS finding (tls-rotate.sh hardcoded host-mount.yml) deferred
— same operator-side class as auto-upgrade.sh hardcoded host-mount,
documented limitation per the PR body.
1. .env_overlay write paths now match read path under STATE_DIR.
app/main.py:343 reads via _state_dir() (post-PR #194), but two
write sites still hardcoded ${DATA_DIR}/state/.env_overlay:
- app/api/admin.py:2687 — configure endpoint secrets persistence
- app/api/marketplaces.py:152 — marketplace PAT persistence
Under flat-mount layout (STATE_DIR=/data-state) the admin UI wrote
secrets to /data/state/.env_overlay while the app read from
/data-state/.env_overlay, silently dropping the value on next
restart. Both write sites now go through _state_dir().
2. host-mount.yml: caddy inherits data:/srv:ro from base, but with
no service populating the data: named volume (other services
switched to direct /data binds), the inherited mount points at an
empty Docker volume — try_files finds nothing, every parquet
download falls through to uvicorn, defeating the v0.36.0
file_server bypass under the host-mount layout. Added a caddy
override that restates all mounts including a direct /data:/srv:ro
bind. Mirrors the comment + treatment already in flat-mount.yml.
DuckDB BigQuery extension defaults `bq_query_timeout_ms` to 90 s, which
is too tight for analyst-scale queries against view-backed BQ datasets.
`agnes query --remote` HTTP 400'd with `Binder Error: Query execution
exceeded the timeout. Job ID: ...` whenever the underlying BQ job ran
longer than 90 s, even though the job itself was healthy.
Add `data_source.bigquery.query_timeout_ms` (default 600 000 ms = 10 min,
sentinel 0 falls through to the extension default). Applied via
`SET bq_query_timeout_ms` after every `LOAD bigquery` on every BQ-touching
DuckDB session: orchestrator's `_remote_attach` ATTACH path, BqAccess
session factory, and the standalone extractor. Configurable via
`/admin/server-config` UI.
Fail-soft: extension versions that don't recognise the setting silently
keep the default rather than poisoning the session.
Devin flagged that run_session_collector still had the same audit-skip
gap I fixed in run_verification_detector and run_corporate_memory in
the previous two rounds — a PermissionError walking /home, an OSError
on /data/user_sessions mkdir, or any other unhandled exception from
collector.run() would skip the audit_log row and only show in docker
logs.
Same try/except + unhandled_error pattern as the sibling endpoints.
All three LLM-pipeline run-* endpoints now record their failures the
same way; /admin/scheduler-runs sees them. Regression test in
tests/test_admin_run_endpoints.py::TestRunSessionCollector::test_unhandled_exception_still_audits.
Devin flagged that run_corporate_memory still had the same audit-skip
gap I just fixed in run_verification_detector — if collect_all() throws
anything other than the already-translated ValueError (DuckDB lock,
network blip, unexpected SDK error), the audit_log row was never
written and /admin/scheduler-runs missed the failure.
Same try/except + unhandled_error pattern as the verification_detector
fix from 4c4dfee8. Regression test in
tests/test_admin_run_endpoints.py::TestRunCorporateMemory::test_unhandled_exception_still_audits.
Three changes addressing user feedback during e2e test of #179 + Devin Review on e86dd5ed.
1) /profile/sessions — new self-service user page in the user menu.
Lists all session jsonls the caller uploaded via `agnes push` joined
against session_extraction_state. Each row shows uploaded_at, file
size, status badge (pending/processed/extracted), processed_at, and
items_extracted. The page docstring + help text explicitly call out
that items_extracted=0 means the verification detector ran fine but
the LLM found no claims to track — that's the documented "no items"
outcome, not a broken pipeline. Closes the gap surfaced during the
e2e test of #176 where a user could see their sessions on disk and
process them through the LLM but had no UI to inspect what happened.
2) run_verification_detector audits unhandled exceptions (Devin #1).
If detector.run() threw anything other than the already-translated
ValueError, the audit_log row was never written. The endpoint now
wraps detector.run in try/except, records the exception in
audit_params["unhandled_error"], then re-raises as 500 after audit.
The /admin/scheduler-runs page surfaces the failure row with the
error type + message.
3) SCHEDULER_AUDIT_ACTIONS list corrected (Devin #2). Previous list
had "marketplaces_sync_all" (wrong — actual is "marketplace.sync_all")
plus "data_refresh" and "scripts_run_due" which app/api/sync.py and
app/api/scripts.py don't write to audit_log. Fixed to the four
actually-logged strings; comment points at the missing audit calls
as a follow-up.
Tests: tests/test_web_ui.py adds TestAdminRoleGuards::test_profile_sessions_page_no_admin_required and tightens test_admin_scheduler_runs_page_admin_only to assert the correct marketplace.sync_all string.
run_session_collector called collector.main() which did argparse.parse_args()
on uvicorn's sys.argv (['app.main:app', '--host', ...]) → sys.exit(2) →
SystemExit(2), which inherits from BaseException, escapes FastAPI handlers,
and propagates through the thread pool. Every scheduler tick that fired the
endpoint either 500-ed or risked killing the uvicorn worker.
services/session_collector/collector.py now exposes run(dry_run, verbose)
that returns (rc, stats); main() is a thin CLI shim that parses argv and
delegates. The admin endpoint calls run() directly and audit-logs the
per-run stats (users_processed, files_copied, files_skipped) instead of
just the rc. Three regression tests in TestRunHelper.
Closes Devin Review finding on app/api/admin.py:2819 (#179).
Devin BUG: /api/admin/configure seeds an ai: block to the writable
overlay at DATA_DIR/state/instance.yaml, but the three LLM consumers
imported from config.loader.load_instance_config — which reads the
static config dir only. Even if they had read the overlay, the loader
ran yaml.safe_load directly without passing through _resolve_env_refs,
so '${ANTHROPIC_API_KEY}' would have stayed a literal placeholder. The
pipeline appeared to work because the factory falls back to the env
var directly, but the overlay path itself was dead code.
Two fixes, both required:
1. Switched the three LLM consumers to app.instance_config.load_instance_config:
- services/corporate_memory/collector.py:collect_all
- services/verification_detector/__main__.py:main
- app/api/admin.py:run_verification_detector
2. app/instance_config.py runs the loaded overlay through
config.loader._resolve_env_refs *before* the deep-merge, so
'${ANTHROPIC_API_KEY}' resolves at config-load time.
New regression suite tests/test_instance_config_overlay.py pins:
- env-ref resolution against the overlay (resolved when env set,
empty when env missing — never the literal placeholder)
- deep-merge still preserves static-only sections
- the three consumers reach app.instance_config (inspected via
inspect.getsource so a future refactor that reverts the import
fails the test)
- end-to-end: a seeded overlay + ANTHROPIC_API_KEY env reaches the
factory with a resolved api_key
The PR rewrote collect_all() to call the new
create_extractor_from_env_or_config() helper, but the existing tests
still mocked the old direct create_extractor() symbol and the old
silent-skip-on-missing-config behavior. Five tests in
TestCorporateMemoryCollector and one in TestCollectorExtractorIntegration
were red on the PR branch.
Changes:
- Tests now mock connectors.llm.create_extractor_from_env_or_config
(the symbol the collector imports lazily).
- Renamed test_collect_all_no_ai_config_skips ->
test_collect_all_no_ai_config_or_env_raises and
test_collector_handles_invalid_config -> test_collector_raises_on_invalid_config.
Both assert pytest.raises(ValueError) — the explicit fail-fast
semantics defect 5 of #176 was supposed to enforce.
- collect_all() no longer swallows the factory's ValueError into
stats["errors"]; it propagates so the scheduler / admin endpoint
surface the actionable misconfiguration message instead of
pretending the run was a no-op.
- /api/admin/run-corporate-memory translates the propagated ValueError
into a 500 with the factory's message, matching
/api/admin/run-verification-detector.
The session-collector, verification-detector, and corporate-memory
services now run on the same scheduler-v2 model that already drives
data-refresh, health-check, script-runner, and marketplaces:
- New admin endpoints in app/api/admin.py:
POST /api/admin/run-session-collector
POST /api/admin/run-verification-detector
POST /api/admin/run-corporate-memory
All admin-gated, sync-def (FastAPI thread pool), with one audit row
per invocation. Same single-writer-of-system.duckdb pattern as the
existing /api/marketplaces/sync-all job.
- services/scheduler/__main__.py JOBS gains three entries with offset
cadences (10m / 15m / 17m, all coprime modulo the 30s tick) so the
three LLM-backed jobs don't fire on the same tick and stack their
API + DB load.
- The verification-detector endpoint surfaces the LLM factory's
fail-fast ValueError as HTTP 500 with the actionable message,
preserving the no-silent-skip contract from the previous commit.
Tests:
- tests/test_admin_run_endpoints.py covers admin gating + scheduler
registration + endpoint contract.
- tests/test_scheduler_sidecar.py existing tests continue to pass.
POST /api/admin/configure now writes a default ai: block into the
instance.yaml overlay when the request leaves it untouched and either
ANTHROPIC_API_KEY or LLM_API_KEY is set in the environment. The block
references the env var via ${VAR} syntax — secrets never land in YAML.
connectors.llm.factory grows create_extractor_from_env_or_config which
falls back to ANTHROPIC_API_KEY / LLM_API_KEY when ai_config is empty
and raises a clear ValueError when neither is available. Both
services/corporate_memory and services/verification_detector switch to
the new helper, replacing the old 'silently skip when ai: missing'
path that was the silent-failure root cause.
Tests:
- tests/test_setup_ai_block.py — overlay seeding contract.
- tests/test_llm_provider_env_fallback.py — fallback + fail-fast.
Bring admin UI, audit-log messages, code comments, and analyst-facing
skill docs in line with the post-bootstrap CLI surface (`agnes pull`,
`agnes push`, `agnes init`, `agnes snapshot create`). The legacy
`_LEGACY_STRINGS` detection tuple in `app/api/claude_md.py` and the hook
upgrade markers in `cli/lib/hooks.py` are intentionally left as-is —
they exist precisely to flag pre-rewrite content for re-authoring.
Strip "(folded from `da metrics list`)" / "(lifted from `da metrics
show`)" / "Replaces the old `da analyst status`" docstring noise — the
rename history is in CHANGELOG.md, not in module docstrings.
13 Devin findings across 10 files:
🔴 Critical:
- app/api/v2_catalog.py:42 — `_fetch_hint` returns `da fetch` in /api/v2/catalog
responses (user-visible in every catalog list)
- cli/skills/agnes-data-querying.md — 11 stale `da fetch`/`da sync` refs in the
bundled skill markdown
- config/claude_md_template.txt:38 — referenced `agnes pull --docs-only` flag
that does NOT exist in agnes pull (removed; spec only ships --quiet/--json/
--dry-run)
🟡 Important:
- app/api/admin.py:252 — `da fetch` in bq_max_scan_bytes hint
- cli/commands/auth.py:119 — `da sync` in import-token docstring (--help text)
- cli/commands/tokens.py:48 — "Export it so `da` can use it" prose
- ARCHITECTURE.md — 4 stale rows in CLI commands table
- README.md — stale paragraphs for analysts (da sync, da analyst setup)
🚩 Substantive observations addressed:
- app/api/query.py:249,302,489 — server-side error/help strings still said
`da sync`/`da fetch` (returned in API responses to clients)
- cli/commands/snapshot.py:235-241 — DuckDB existence guard incorrectly
blocked `--estimate` (server-side dry-run that never opens local DB).
Added test ensuring estimate path skips the guard.
Skipped (intentionally historical):
- app/api/admin.py:2377,2429,2437 — historical comments describing past
manifest-vs-sync_state bug; past tense, accurate to keep as `da sync`.
New top-level 'materialize' section, single field (lock_ttl_seconds).
Default 86400 (24h). Backs the file-lock TTL reclaim added in the
per-table-mutex change. Editable via PUT /api/admin/server-config and
the /admin/server-config UI.
When admin registers a materialized BQ row with bucket+source_table but
no source_query, the server generates 'SELECT * FROM `<project>.<ds>.<tbl>`'
from instance.yaml's configured BQ project. Same fallback fires on PUT
when flipping to materialized. The backtick rejection guard, which was
appropriate for DuckDB-flavor source_query, is relaxed for materialized
rows since the new wrapping path (Task 2) runs admin SQL through BQ
jobs API which uses BQ-native syntax (backticks for dashed identifiers).
Devin Review iter #3 found 3 new real bugs after iter #2's fixes landed.
🔴 RBAC check at app/api/query.py:362 used `row["name"]` against
`accessible_set`, but `accessible_set` is keyed by registry IDs
(`get_accessible_tables` returns `resource_grants.resource_id` —
table IDs, not display names). Confirmed by `_table_blocks` projection
at `app/resource_types.py:157-158`. When `id != name` (e.g.
`id="bq.finance.ue", name="ue"`), non-admin users with valid grants
got 403 `bq_path_access_denied`. Switch to `row["id"]`.
🚩 Bare-name pass at app/api/query.py:332 had the same name-vs-id
mismatch (different impact): legitimate accessible rows were skipped
from `dry_run_set`, so the cost guardrail under-counted scan bytes
for non-admin users. Could let an over-cap query through and
under-bill quota. Switch to `row_id` comparison.
🟡 `placeholder_from` for billing_project was dead code.
`_BQ_OPTIONAL_FIELD_DEFAULTS["billing_project"] = ""` seeded an empty
string into every GET payload via `_ensure_bq_optional_fields`. JS
`isUnset = (value === undefined)` evaluated False, so the
`(defaults to <project>)` placeholder NEVER rendered. Drop the seed —
field stays in `known_fields` (UI sees it) but routes through the
unset rendering path on GET, where placeholder_from fires.
Tests: test_get_surfaces_bq_fields_even_when_unset assertion flipped
from "billing_project IS present" to "billing_project NOT auto-seeded"
to lock in the new shape. 67 affected tests pass.
E2E test on dev VM revealed: spec said "configurable via /admin/server-config"
for the cost guardrail cap, but the underlying read path was
`api.query.bq_max_scan_bytes` and `api` is NOT in `_EDITABLE_SECTIONS`. POST
to /admin/server-config rejected `{"sections":{"api":...}}` as "unknown
section(s): api" — the cap was only adjustable via direct YAML edit.
Move to `data_source.bigquery.bq_max_scan_bytes`:
- `_default_remote_query_cap_bytes()` reads from the new path.
- Add to `_OPTIONAL_FIELDS["data_source"]["bigquery"]["fields"]` with the
same shape as `max_bytes_per_materialize` (kind=int, default 5 GiB, hint).
- Add to `_BQ_OPTIONAL_FIELD_DEFAULTS` so it surfaces in the GET payload
even when YAML omits it.
Convention now mirrors `max_bytes_per_materialize` — both BQ cost
guardrails live under `data_source.bigquery`, both editable in the UI.
Closes the operator-side half of the reporter's loop. The CLI fix in
the previous commit makes USER_PROJECT_DENIED errors readable to
analysts; this commit lets admins verify reachability proactively
from /admin/server-config without waiting for analyst reports.
New endpoint POST /api/admin/bigquery/test-connection
(app/api/admin_bigquery_test.py, ~110 LOC):
- Depends(require_admin); registered in app/main.py.
- Builds BqAccess via existing get_bq_access(), runs `SELECT 1 AS ok`
with a 10s polling timeout.
- 200 with {ok, billing_project, data_project, elapsed_ms} on success.
- 400 for `BqAccessError(not_configured)` (operator config issue).
- 502 for any other typed BqAccessError or unknown upstream exception.
- 504 for concurrent.futures.TimeoutError; best-effort cancel_job
invoked (BQ-side cancel may still run; documented caveat).
Server-config placeholder (app/api/admin.py + admin_server_config.html):
- `data_source.bigquery.billing_project` field-spec gains
`placeholder_from: ["data_source", "bigquery", "project"]`.
- renderLeafInput's text branch reads `opts.spec.placeholder_from`,
walks the loaded `original` config dict, injects
`placeholder="(defaults to <project>)"` into the input HTML at
construction time. Admin sees the access.py:339-340 fallback rule
visible directly in the UI without reading source.
UI button:
- "Test BigQuery connection" button next to data_source's Save button.
- onTestBigQuery() POSTs to the endpoint, renders structured result
inline (green check + elapsed_ms on success; red kind + hint on
failure).
Tests: 6 endpoint cases + 1 placeholder payload test = 7 GREEN. 62
total across the affected admin server-config test files.
Now that VIEW/MATERIALIZED_VIEW always wrap via bigquery_query() (the
prior `legacy_wrap_views=True` branch behavior, made unconditional in
the previous commit), the toggle has no semantic meaning and is removed
across the codebase.
Production code:
- app/api/admin.py: drop the field from _OPTIONAL_FIELDS["data_source"]
["bigquery"]["fields"] and from _BQ_OPTIONAL_FIELD_DEFAULTS, plus the
comment block above the defaults dict.
- config/instance.yaml.example: drop the example snippet.
- src/orchestrator.py: update the inner-objects skip-branch comment to
reflect the new BQ behavior (the skip itself stays — keboola
use_extension=False still inserts _meta rows without inner views).
- app/web/templates/admin_tables.html: rewrite operator copy in the
register and edit forms to reflect always-wrap.
Tests:
- tests/test_admin_server_config.py (TestServerConfigBigQueryFields):
flip assertions from "field IS present" to "field NOT present" on
legacy_wrap_views. Drop the test_post_persists_legacy_wrap_views test
since the field no longer exists.
- tests/test_admin_server_config_known_fields.py: same flip on the
known-fields registry assertion.
- tests/test_bigquery_extractor.py: drop the obsolete
test_view_entity_does_not_create_master_view_by_default (asserted the
bug we fixed) and test_legacy_wrap_views_toggle_restores_old_behavior
(toggle no longer meaningful). Update remaining test docstrings.
Operators with `legacy_wrap_views: true` set in their overlay get the
new (equivalent) behavior automatically — the unrecognized key is
silently ignored by the YAML loader. Operators with `false` get the
issue-#160 fix as a behavior change, not a regression.
Spec gate updated: production code grep gate
grep -rn 'legacy_wrap_views' connectors app src config cli
must return zero. tests/ excluded — historical "removed in #160"
breadcrumbs and `assert "X" not in fields` regression guards retained
as anti-regression signals.
The strict source_type-availability validator from the prior commit
broke ~12 existing tests that register tables on the default test
instance (where `data_source.type` resolves to 'local' since no
instance.yaml is loaded).
The intent of the validator is to catch *explicit* misconfig:
`type=bigquery` instance + `source_type=keboola` payload with no
`data_source.keboola.*` block. The bootstrap workflow — admin sets up
a fresh instance and registers a few tables before pointing at a real
source — should not be gated here.
Loosen the check: when `get_data_source_type()` returns 'local' (the
fallback when no `data_source.type` is set), skip the rejection. The
explicit mismatch case still 422s because that path resolves
`configured_primary` to a real source type.
Also adds an autouse keboola_instance fixture to test_journey_sync_query.py
which exercises Keboola registrations through the full sync→query
flow — the fixture documents the test's data-source assumption rather
than relying on the bootstrap escape hatch.
E2E sub-agent finding: instance configured with `data_source.type='bigquery'`
and no `data_source.keboola.*` block. Admin POSTs `{source_type: 'keboola'}`
to /api/admin/register-table → returns 201, row lands in the registry, but
never syncs because the scheduler has no Keboola URL/token to ATTACH
against. Operator only notices the gap when `da catalog` keeps showing
nothing.
The new `_validate_source_type_configured` helper runs immediately after
the id/view-name collision checks in `register_table`. A source_type is
considered configured when:
- it matches `get_data_source_type()` (the instance's primary), OR
- a non-empty `data_source.<source_type>` block exists in the effective
`instance.yaml` (multi-source instance), OR
- it's in `_SOURCE_TYPES_INDEPENDENT_OF_DATA_SOURCE` (Jira / local — both
get data through paths that don't involve `data_source.*`).
Returns 422 with a message that names the configured primary source and
points at `/admin/server-config` for enabling a secondary one. None /
empty source_type is still tolerated for backward compat with legacy CLI
scripts that don't set the field — the route resolves it later.
5 new tests cover: keboola-on-bq rejected, bq-on-keboola rejected,
matching source_type still works, jira allowed regardless, omitted
source_type passes through.
Existing tests that registered Keboola rows on the unconfigured default
test instance now opt into a `keboola_instance` fixture to satisfy the
new validator (tests/test_admin_bq_register.py + .keboola_materialized
+ .unregister_cleanup; the multi-source PUT test in test_admin_bq_register
adds a `keboola` block to its synthetic config).
Pre-existing test_missing_project_returns_error failure in
TestRebuildFromRegistry is unrelated (config-cache leakage from a
previous test in the same class) — confirmed pre-existing on the prior
commit via `git stash` reproduction.
E2E sub-agent finding: register a materialized BQ row → sync to materialize
the parquet at `/data/extracts/bigquery/data/<id>.parquet` → DELETE the
registry row. The DB row goes away but:
- the parquet file stays on disk forever, AND
- the sync_state row stays, so `/api/sync/manifest` keeps advertising the
dropped table to `da sync`, AND
- the orchestrator's next rebuild can resurrect a master view by picking
up the leftover parquet.
Two-part fix in `unregister_table`:
1. For materialized rows on bigquery/keboola, remove
`${DATA_DIR}/extracts/<source_type>/data/<name>.parquet` (and any stale
`<name>.parquet.tmp` from a crashed prior materialize). Filename is
keyed on `table_registry.name` to match sync_state bookkeeping.
File-removal errors are logged but don't fail the DELETE — the registry
row is already gone, and an orphan parquet won't get a master view at
next rebuild because the orchestrator's _meta-driven scan never picks
up bare parquet files.
2. Always clear `sync_state` + `sync_history` rows for the dropped table_id
so the manifest stops advertising the table — applies to all source
types and modes, not just materialized, since any synced row had a
sync_state entry.
Orchestrator-side defensive guard (Finding 2b) is a no-op in the current
implementation: `_attach_and_create_views` only creates master views from
`_meta` rows in each connector's `extract.duckdb`, so a parquet without a
matching `_meta` entry is already invisible to the rebuild. The new
test `test_orchestrator_skips_orphan_parquet_in_extracts` is kept as a
regression guard for that contract.
5 tests cover: BQ + Keboola materialized DELETE removes parquet, remote
DELETE doesn't error trying to remove a non-existent file, sync_state
cleared on DELETE, orchestrator orphan-skip invariant.
E2E testing showed admin POSTs of materialized BQ rows whose source_query
uses BigQuery-native backtick identifiers (`prj.ds.t`) silently no-op'd at
the next sync tick — the materialize path runs the SQL through the DuckDB
BQ extension's COPY which uses DuckDB's parser; backticks aren't recognized
and the query either parse-errors or matches zero rows. No parquet lands at
the canonical path and no error reaches an operator-visible surface.
Two-part fix:
1. RegisterTableRequest's _check_mode_query_coherence model_validator now
rejects any source_query containing a backtick with a 422 + actionable
message pointing at the DuckDB equivalent (bq."dataset"."table"). Same
check is applied in update_table on the merged record so PATCHes that
flip a stored source_query to backtick form are also caught. Covers BQ
AND Keboola materialized rows since both connectors funnel source_query
through DuckDB's COPY.
2. _run_materialized_pass now persists per-row failures via the new
SyncStateRepository.set_error / clear_error methods (existing
sync_state.error / status columns — no schema migration). GET
/api/admin/registry enriches each row with `last_sync_error` from a
single batched SELECT against sync_state, so the admin UI / da admin
status can show "this table failed last sync because: X" instead of
operators having to trawl scheduler logs. Recovered rows have the
error cleared automatically — update_sync's success path resets
status='ok' / error=NULL on the upsert.
The materialized-path test fixture's _materialized_payload helper is
updated to use DuckDB-flavor SQL (the prior backtick example pre-dated the
fix). 6 new tests cover register/update rejection on BQ + Keboola, the
sync_state error persistence, and the registry response surface.
Devin's second review pass on commit 16938ae7 surfaced 2 more issues:
BUG_pr-review-job-58ae3148_0001 — non-BQ materialized via PUT bypasses source_query check
app/api/admin.py update_table only enforces 'query_mode=materialized
requires source_query' for source_type='bigquery' rows (via the
synthetic RegisterTableRequest at line 2129+). Non-BQ source types
(Keboola) skip the check — admin could PUT {query_mode: materialized}
on a Keboola local row without source_query, persist successfully,
then crash at the next sync tick when kb_materialize_query received
sql=None and DuckDB rejected COPY (None) TO '...'.
Fix: generic coherence guard before the BQ-specific block — for ALL
source types, query_mode='materialized' requires non-empty source_query
in the merged record. Returns 422 with a hint about reverting via
query_mode='local'/'remote'.
ANALYSIS_pr-review-job-642ff90f_0007 — diagnose returns 'ok' on BQ resolution failure
app/api/health.py:_check_bq_billing_project caught get_bq_access()
exceptions and returned status='ok' with a 'could not resolve' detail.
Automated alerting keyed on status != 'ok' would silently miss missing
google-cloud-bigquery, auth failures, or malformed config. Fix: return
status='unknown' on resolution failure — surfaces it on operator
dashboards without promoting the overall health to 'degraded' (which
'warning' does, intentionally for the billing==project case).
Tests:
- test_update_keboola_to_materialized_without_source_query_rejected:
PUT {query_mode: materialized} on a Keboola local row returns 422
with 'source_query' in the detail
- test_diagnose_returns_unknown_status_when_bq_resolution_fails:
when get_bq_access raises, the bq_config service entry surfaces
status='unknown' (not 'ok')
Full sweep: 2507 passed, 25 skipped, 0 failed (+2 from previous sweep
because of the 2 new regression tests; 8 pre-existing internal_roles
schema-migration failures still ignored per task brief).
Issue #108 Milestone 1. Adds BigQuery table registration via /admin/tables UI and `da admin register-table` CLI without hand-editing table_registry. POST /api/admin/register-table/precheck for round-trip validation. --dry-run flag on CLI. Audit-log entries on register/update/unregister. PUT /api/admin/registry/{id} now preserves registered_at (closes#130).
Replaces the BigQuery wrap-view pattern with a discovery + scoped-fetch toolkit driven by the analyst's Claude session. Adds /api/v2/{catalog,schema,sample,scan,scan/estimate}, da catalog/schema/describe/fetch/snapshot/disk-info CLI commands, sqlglot-backed WHERE validator, process-local quota tracker, agent rails skill (cli/skills/agnes-data-querying.md). BREAKING: BQ wrap views off by default — set data_source.bigquery.legacy_wrap_views=true for one cycle. Backward-compat field_validator on primary_key. Catalog cache now matches documented 300s TTL with RBAC fresh per request. Cuts release v0.14.0.
Adds /admin/server-config UI for editing instance.yaml from the web. Hardening: SSRF gate on data_source URLs, narrow-overlay write strategy, atomic writes, audit log with secret masking on shape changes, threading lock on read-modify-write, corrupt-overlay refusal on write side + louder log on read side, modal Promise resolution on backdrop dismiss, sentinel scrub on save (defense-in-depth client+server). Bundles Windows PowerShell wrapper from #80. Cuts release v0.13.0.
* fix(security+ops): #82#85#87 — auth hardening, API validation, deploy posture
Security and operational hardening across three issue groups:
- M23: docker-compose.override.yml → docker-compose.dev.yml (BREAKING, prod foot-gun)
- C13: Container runs as non-root user 'agnes' (USER directive in Dockerfile)
- M21: Docker resource limits (mem_limit, cpus) on app + scheduler
- M22: Caddyfile security headers (X-Frame-Options, X-Content-Type-Options, Referrer-Policy, -Server)
- M17: /api/health split into minimal (unauth) + /api/health/detailed (auth) (BREAKING)
- M26: release.yml restricts build-and-push to main + workflow_dispatch; paths-ignore for docs
- C2: table_id traversal validation on /api/data/{table_id}/download
- M4: Upload streaming (chunk-read + temp file) instead of full-buffer; /local-md hashed filename
- C5: reset_token removed from POST /api/users/{id}/reset-password response
- C8: Startup WARNING when no user has password_hash (bootstrap window visible)
- M9: Audit log on failed web form login (mirrors /auth/token endpoint)
- M10: Atomic magic-link consume via compare-and-swap (CONSUMED: marker + DuckDB conflict catch)
Also: SSRF protection on /api/admin/configure (#46), memory stats SQL aggregation (#90)
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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* fix(review): SSRF 169.254.x.x + IPv6 multicast; M10 marker cleanup safety
Review fixes:
- Add 169.254.0.0/16 (link-local, cloud metadata) to SSRF regex — was
missing, allowing requests to AWS/GCP/Azure metadata endpoints
- Add ff[0-9a-f]{2}: (IPv6 multicast) to SSRF regex
- M10: wrap Step 3 (CONSUMED marker cleanup) in try-except with
warning log — prevents unhandled exception if DB write fails after
successful token consumption
- Add test for 169.254.169.254 SSRF rejection
Generated with [Devin](https://cli.devin.ai/docs)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* fix(review): SSRF IPv6 bypass, CLI health endpoint, upload FD leak
Address Devin Review findings on PR #104:
1. SSRF IPv6 bypass: Replace hostname regex with DNS resolution +
ipaddress module checks. The old regex patterns like `fe80:` only
matched up to the first colon, missing real IPv6 addresses like
`fe80::1`, `fc00::1`, `ff02::1`. The new approach resolves the
hostname via getaddrinfo and checks each resulting IP against
ipaddress.is_private/is_loopback/is_link_local/is_reserved/is_multicast.
2. CLI commands broken: `da setup test-connection`, `da setup verify`,
`da diagnose`, `da status` all called /api/health expecting the old
format (status=="healthy", services dict). Now they call
/api/health/detailed for service-level checks (with graceful fallback
to the minimal endpoint when auth is not configured).
3. Temp file handle leak: _stream_to_temp returns an open
NamedTemporaryFile; callers now close it before shutil.move() to
prevent FD leaks until GC.
Also adds IPv6 SSRF test cases (loopback, link-local, unique-local,
multicast) with mocked DNS resolution for test environment independence.
Generated with [Devin](https://cli.devin.ai/docs)
Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* fix(review): download regex blocks hyphenated IDs; document health split
Address Devin Review round-3 findings on PR #104:
1. _SAFE_IDENTIFIER regex blocked hyphenated table IDs: The download
endpoint used the strict SQL-identifier regex which does not allow
dots or hyphens, but Keboola table IDs like in.c-crm.orders
contain both. Switched to _SAFE_QUOTED_IDENTIFIER which allows dots
and hyphens while still blocking path-traversal chars (/, .., \)
and quote/control characters. Added test for hyphenated/dotted IDs.
2. Documented health endpoint split in DEPLOYMENT.md: Added Health
checks & external monitoring section explaining both endpoints
(minimal unauth /api/health vs authenticated /api/health/detailed)
and how to wire external monitoring tools to the detailed endpoint
with a PAT.
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Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
* release(0.12.1): cut hotfix for snapshot integrity + #82/#85/#87 hardening
* fix(security): apply CAS pattern to password reset confirm (#82/M10 follow-up)
Devin review on the rebased PR flagged the asymmetry: magic-link verify
got the atomic compare-and-swap pattern in the original M10 fix, but
password reset confirm at /auth/password/reset/confirm was still using
read-validate-clear. Two concurrent POSTs with the same valid reset
token could both succeed in setting different new passwords (last-write-
wins). Lower severity than the magic-link race because the attacker
would need the reset token AND to race the legitimate user, but the
asymmetry was a polish gap.
Mirrors app/auth/providers/email.py::_consume_token CAS exactly: write
unique CONSUMED:<random> marker via UPDATE...WHERE token=old_token, then
SELECT to verify our marker won, then proceed. Only the winner clears
the marker and applies the password change.
New regression test_concurrent_reset_only_one_wins in
tests/test_password_flows.py::TestResetConfirm pins the contract: two
ThreadPoolExecutor workers + Barrier hit /reset/confirm with the same
token; exactly one gets 302 (password applied), the other gets 200 with
'Invalid or expired'. Sanity-checked against the pre-CAS code — both
POSTs got 302 (race confirmed).
---------
Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
This squashes 13 commits from ma/staging plus a small docstring translation
into a single coherent unit. Three workstreams.
== RBAC v13 redesign ==
- Drops core.viewer/analyst/km_admin/admin hierarchy and the
internal_roles / group_mappings / user_role_grants / plugin_access tables.
- Replaced by user_group_members + resource_grants. Atomic v12→v13 backfill
wrapped in BEGIN/COMMIT; ROLLBACK leaves schema_version at 12 for retry.
- Two authorization primitives in app.auth.access:
require_admin — Admin-group god-mode
require_resource_access(rt, "{path}") — entity-scoped grants
Single DB lookup per request; no session cache; no implies BFS.
- /admin/access UI (single page) replaces /admin/role-mapping +
/admin/plugin-access. CLI `da admin group/grant *` replaces
`da admin role/mapping/grant-role/revoke-role/effective-roles`.
- ResourceType.TABLE listing-only — admins can record table grants,
runtime enforcement still flows through legacy dataset_permissions
(migration plan in docs/TODO-rbac-data-enforcement.md).
== Claude Code marketplace ==
- Aggregated /marketplace.zip + /marketplace.git/* (PAT-gated,
RBAC-filtered, content-addressed cache via dulwich).
- Admin god-mode dropped on the marketplace surface — admins curate
their own view via grants like everyone else.
- Bare-repo cache materializes per RBAC-filtered ETag; stale entries
not pruned in this iteration (disclaimed in git_backend.py docstring).
== #81#83#44 security/ops hardening ==
- #81 Group A — orchestrator ATTACH allow-listing (extension/url/alias).
- #81 Group B — Keboola extractor 3-state exit codes:
0 success / 1 total fail / 2 PARTIAL fail
Sync API logs PARTIAL FAILURE alert on exit 2. Operators with binary
alerting must teach it the new partial signal.
- #81 Group C — schema v10 view_ownership; rejects silent overwrite
of a prior connector's view name on collision.
- #81 Group D — extractor-side identifier validation.
- #83 — Jira webhook fail-closed when JIRA_WEBHOOK_SECRET unset
+ path-traversal fix.
- #44 — entire /api/scripts/* surface is admin-only (planted-script +
sandbox-bypass risk closed).
== Web UI polish + deploy fix ==
- /admin/access: live grant-count badges (no stale snapshot revert),
shared-header CSS link added to /catalog and /admin/{tables,permissions},
per-resource-type colored stripes.
- docker-compose.host-mount.yml: bind,rbind so dual-disk hosts don't
silently shadow sub-mounts and write state to the wrong disk.
== OSS vendor-neutralization (waves 1+2) ==
- scripts/grpn/ → scripts/ops/. Customer-specific identifiers
(project IDs, internal hostnames, dev/prod VM IPs, brand names)
replaced with placeholders across code, docs, Terraform, Caddyfile,
OAuth probe, and planning docs. Downstream infra repos that copied
scripts/grpn/agnes-tls-rotate.sh or agnes-auto-upgrade.sh must
update the path.
== Translation ==
- src/repositories/user_groups.py::ensure_system docstring translated
from Czech to English for codebase consistency.
Co-authored-by: Mina Rustamyan <mina@keboola.com>
* feat(auth): v9 schema — unified role management foundation (WIP)
Tasks 1-5, 10 of the role-management-complete plan. Foundation only,
follow-up commits add REST API, CLI, UI, and tests.
Schema v9:
- user_role_grants table: direct user → internal_role mapping
(complementary to group_mappings). Drives PAT/headless auth and
persists across sessions. Source field tracks 'direct' vs auto-seed.
- internal_roles.implies (JSON): transitive role hierarchy. core.admin
implies core.km_admin → core.analyst → core.viewer. Resolver does BFS
expand at lookup time.
- internal_roles.is_core (BOOL): distinguishes seeded core.* hierarchy
from module-registered roles. UI renders them differently.
- v8→v9 migration: ADD COLUMN, CREATE TABLE, _seed_core_roles +
_backfill_users_role_to_grants, then NULL legacy users.role values.
DuckDB FK constraint blocks DROP COLUMN — sloupec zůstává jako
deprecated artifact (UserRepository ignoruje), fyzický drop deferred.
Resolver:
- Regex extended to allow dotted namespace (core.admin,
context_engineering.admin), max 64 chars total.
- expand_implies(role_keys, conn): BFS over implies JSON column.
- resolve_internal_roles signature gains optional user_id parameter;
unions group-mapping resolution with user_role_grants direct grants
before implies expansion.
require_internal_role:
- Two-path resolution: session cache (OAuth) → DB grants (PAT/headless
fallback). PAT clients now legitimately satisfy gates without the
OAuth round-trip, fixing the v8 limitation where every PAT-callable
admin endpoint needed require_role(Role.ADMIN) instead of
require_internal_role(...).
Backward-compat:
- require_role(Role.X) and require_admin become thin wrappers over
require_internal_role(f"core.{role}"). Implies hierarchy preserves the
legacy "at least this level" semantics automatically — no per-level
comparison code needed.
- src/rbac.py helpers (is_admin, has_role, get_user_role,
set_user_role, can_access_table, get_accessible_tables) all read from
the resolver via _get_internal_role_keys.
- UserRepository.create() and update() now mirror role changes into
user_role_grants via _grant_core_role helper. Preserves API while
making the new table the source of truth.
- UserRepository.delete() pre-deletes user_role_grants rows
(FK cascade — DuckDB doesn't auto-cascade).
- count_admins() reads user_role_grants ⨝ internal_roles instead of the
now-NULL users.role column.
First consumer:
- app/api/admin.py module-level docstring documents the v9 pattern for
future module authors. Existing require_role(Role.ADMIN) callsites
flow through the wrapper; no behavior change for OAuth callers, and
PAT callers gain access via direct grants.
Tests: full suite green (1396 passed, 6 skipped). Existing tests
exercise the new pathway transparently because UserRepository.create
auto-grants. New test_pat_caller_with_direct_grant_passes pins the
PAT-aware contract.
Schema: v9 (was v8). pyproject.toml + CHANGELOG bump deferred to the
final PR-prep commit.
* feat(auth): role management complete — REST API + CLI + UI + docs (v0.11.4)
Sjednocuje legacy users.role enum s v8 internal-roles foundation pod jeden
model s implies hierarchií, dodává admin UI + REST API + CLI pro správu
group mappings i přímých user grants, a dělá require_internal_role
PAT-aware tak, aby admin endpointy fungovaly uniformly napříč OAuth
i headless callery.
REST API (app/api/role_management.py, +496 LOC):
- 8 endpointů pod /api/admin: internal-roles list, group-mappings CRUD,
users/{id}/role-grants CRUD, users/{id}/effective-roles debug.
- Všechny gated require_internal_role("core.admin"). Audit-log na každé
mutaci (role_mapping.created/deleted, role_grant.created/deleted).
- Last-admin protection: refuse to delete the final core.admin grant
(mirrors users.py:count_admins protection).
- Nový UserRoleGrantsRepository v src/repositories/user_role_grants.py.
CLI (cli/commands/admin.py extension, +258 LOC):
- da admin role list / show <key>
- da admin mapping list / create <group-id> <role-key> / delete <id>
- da admin grant-role <email> <role-key>
- da admin revoke-role <email> <role-key>
- da admin effective-roles <email>
- Všechno přes typer + PAT auth, --json flag, response-shape tolerantní.
UI (admin_role_mapping.html + admin_user_detail.html + nav + user list):
- Nová stránka /admin/role-mapping: internal_roles read-only table +
group_mappings table with create/delete forms.
- Nová stránka /admin/users/{id}: core role single-select + capabilities
multi-checkbox + effective-roles debug (direct + group + expanded).
- Existing user list dostává "Detail" link na novou stránku.
- Nav link na /admin/role-mapping.
Tests: +85 nových testů přes 4 nové soubory:
- test_schema_v9_migration.py (8) — fresh install + v8→v9 backfill +
legacy column NULL semantics + unknown-role fallback + invariants.
- test_api_role_management.py (33) — všech 8 endpointů, happy + error
paths, audit-log assertions, last-admin protection.
- test_cli_admin_role.py (25 + 1 conditional) — typer subcommands,
text + json output, PAT integration smoke.
- test_admin_role_mapping_ui.py (9) + test_admin_user_capabilities_ui.py (10)
— page rendering, auth gating, form contracts, JS hooks.
Full suite: 1482 passed, 6 skipped (was 1396 → +86, žádné regrese).
Docs:
- docs/internal-roles.md kompletní rewrite — odstranil "no UI yet",
přidal hierarchy diagram, dual-path resolution, dotted-namespace
convention, admin workflow přes UI/CLI/REST, refresh semantics
for group mappings vs direct grants, migration notes.
- CLAUDE.md schema v8 → v9.
- CHANGELOG.md [0.11.4] s BREAKING marker pro users.role NULL
semantics + complete Added/Changed/Removed/Internal sekce.
- pyproject.toml: 0.11.3 → 0.11.4.
Sequencing: po mergi tohoto PR Pabu rebasuje pabu/local-dev (PR #72)
na main, jeho schema migrations se posouvají z v9/v10/v11 na v10/v11/v12.
Implementation breakdown:
- Sequential (já): foundation tasks — schema v9, resolver, PAT-aware
require_internal_role, backward-compat wrappers, rbac refactor,
UserRepository auto-grant.
- Parallel sub-agents (3 worktrees, ~10 min): REST API, CLI, UI.
- Sequential (já): integrace, docs/CHANGELOG/version, schema tests,
fullsuite verification.
* fix(auth): address Devin review on PR #73 — three regressions
Three concrete bugs caught in Devin's PR review, all fixed in this commit.
1. **users.role hydration on read** (the big one):
v8→v9 migration NULLs users.role for every existing user, but a long
tail of read sites still inspect user["role"] directly:
- app/web/templates/_app_header.html:15 — admin nav gate
- app/web/templates/_app_header.html:36-37 — role badge in dropdown
- app/web/router.py:319-321 — UserInfo.is_admin/is_analyst/is_privileged
- app/web/router.py:489 — corporate memory is_km_admin
- app/api/catalog.py:54 — admin "see all tables" bypass
- app/api/sync.py:215 — admin "see all sync states" bypass
Without a fix, every existing admin loses the entire admin nav (and
API admin bypasses) immediately after upgrade — a serious regression.
Fix: new helper _hydrate_legacy_role() in app/auth/dependencies.py
maps the highest-level core.* grant back into user["role"] as the
legacy enum string. Called from get_current_user() on both auth paths
(LOCAL_DEV_MODE + JWT/PAT). Idempotent — skips when role is already
populated. Net effect: every pre-v9 callsite keeps working transparently
for both OAuth and PAT callers, with one extra DB round-trip per
authenticated request (same cost as the existing PAT-aware
require_internal_role fallback).
3 regression tests in tests/test_schema_v9_migration.py:
- test_hydration_recovers_role_from_user_role_grants
- test_hydration_returns_highest_grant (multi-grant → highest wins)
- test_hydration_falls_back_to_viewer_when_no_grants (safe fallback)
2. **CLI effective-roles TypeError**:
API returns direct/group as List[Dict] (RoleGrantResponse-shaped),
but the CLI did ', '.join(direct) which raises TypeError on dicts.
Tests masked it because mocks used bare string lists. Replaced
raw .join() with a _names() helper that extracts role_key from
each item, falling back to str() for legacy mock shapes.
3. **UI template field-name mismatch**:
admin_user_detail.html JS reads data.groups but the API serializes
the field as group (singular, per EffectiveRolesResponse pydantic).
Currently benign because the API always returns group:[], but the
field would silently disappear once the group-derived view is wired
up. Added data.group as the primary lookup, kept the legacy aliases
for shape-drift tolerance.
Full suite: 1485 passed (was 1482, +3 hydration tests), 6 skipped, no
regressions.
* fix(auth): Devin review #2 + UX self-service + RBAC docs rename
Three threads landed in one commit because they share the same
auth/role surface and CHANGELOG entry.
Devin review #73 second round (2 actionable findings):
- _hydrate_legacy_role no longer short-circuits on truthy users.role.
The role-management endpoints (POST/DELETE /api/admin/users/{id}/
role-grants + the changeCoreRole UI flow) only mutate
user_role_grants — they don't update the legacy column. The early
return trusted that stale value, so a user downgraded via the new
REST/UI kept role="admin" in their dict on subsequent requests,
which fooled _is_admin_user_dict (src/rbac.py) and the catalog/sync
admin-bypass short-circuits into retaining elevated table access
even though require_internal_role correctly denied the API gates.
Always re-resolves now, making user_role_grants the single source
of truth on every authenticated request. Cost: one DB round-trip
per request — same as the existing PAT-aware fallback. Pinned by
test_hydration_ignores_stale_legacy_role_after_grant_revoke.
- Dev-bypass (app/auth/dependencies.py) and OAuth callback
(app/auth/providers/google.py) now pass user_id to
resolve_internal_roles so direct grants land in
session["internal_roles"] alongside group-mapped roles. Pre-fix,
every admin-gated request fell through to the per-request DB
fallback inside require_internal_role and the dev-bypass log line
read "resolved 0 internal role(s)" for an obviously-admin user.
test_session_internal_roles_populated updated to assert union.
User-visible UX (also addresses local-test feedback):
- HTTP 500 on /admin/users post-v8→v9 migration — UserResponse.role
is required str, but legacy users.role was NULL-ed by the
migration. _to_response in app/api/users.py now routes every dict
through _hydrate_legacy_role; same fix lifts the silent no-op of
last-admin protection in update_user/delete_user (the role-equality
short-circuits would skip the count_admins guard for migrated
admins). Three regression tests under TestAPIUsersPostMigration.
- /profile is now a real self-service detail page for *every*
signed-in user (not just admins). Three new server-side sections:
Effective roles (resolver output as chip cloud), Direct grants
(rows in user_role_grants with source label), Roles via groups
(which Cloud Identity / dev group grants which role for the
current user). Non-admins finally see *why* a feature is or isn't
accessible. Admins additionally see a deep-link to
/admin/users/{id} for editing their own grants.
- /admin/role-mapping group-id picker. New "Known groups" panel
above the create form: clickable chips for the calling admin's
own session.google_groups (tagged "your group") merged with
external_group_ids already used in existing mappings (tagged
"already mapped"). Click a chip → fills the form. Empty-state
copy points operators at LOCAL_DEV_GROUPS / Google sign-in
instead of leaving them to guess Cloud Identity opaque IDs from
memory.
Operational fixes:
- Scheduler log-noise: every cron tick produced a
POST /auth/token 401 because the auto-fetch fallback called the
endpoint with just an email (no password) and silently fell
through. Removed the broken path entirely. Operators set
SCHEDULER_API_TOKEN (long-lived PAT) in production; in
LOCAL_DEV_MODE the dev-bypass auto-authenticates the un-tokenized
request, so jobs continue to work.
Docs:
- docs/internal-roles.md → docs/RBAC.md (git mv preserves history).
Standard industry term, more discoverable for engineers grepping
for RBAC in a new repo. Restructured: Quickstart-by-role
(operator / end-user / module author), step-by-step
Module-author workflow with code examples (register key, gate
endpoint, declare implies, write contract test), naming pitfalls,
refresh semantics. CLAUDE.md gets a new
"Extensibility → RBAC" section pointing contributors at the doc
before they add gated endpoints. Cross-refs in app/api/admin.py
+ tests/test_role_resolver.py updated.
Tests: 293 in the auth/role/scheduler/UI test set passed, 0 regressions.
* fix(auth): Devin review #3 — login flows + RBAC docs
Two new findings on commit 7d1c048, both real and addressed.
Finding 1 (BUG, HTTP 500): every auth login flow loaded users via
UserRepository.get_by_email and passed user["role"] straight to
create_access_token, Pydantic response models, and _set_login_cookie
without going through _hydrate_legacy_role. Post-v9 the legacy column
is NULL for migrated users, and TokenResponse.role is a required str —
so POST /auth/token raised ValidationError → HTTP 500 for any v8-admin
trying to log in via password. Same root cause produced non-crashing
but semantically wrong JWTs (role: null) from Google OAuth, password
web flows, and email magic-link verification.
Fix: hydrate inline in every login flow before reading user["role"]:
- app/auth/router.py — POST /auth/token (the crash site)
- app/auth/providers/google.py — OAuth callback (was just stale JWT)
- app/auth/providers/password.py — 5 flows: JSON login, web login,
JSON setup, web reset confirm, web setup confirm
- app/auth/providers/email.py — centralized in _consume_token,
covers both /verify endpoints
New regression class TestAuthLoginFlowsPostMigration pins both the
no-crash and the correct-role contracts for all four legacy levels
(viewer/analyst/km_admin/admin) on POST /auth/token.
Finding 2 (DOCS): docs/RBAC.md showed register_internal_role() being
called with implies=[...], but the function signature is (key, *,
display_name, description, owner_module). A module author copying the
example would TypeError at import time. The implies field on
internal_roles IS honored at runtime by expand_implies, but the
registry-side write path (register_internal_role + InternalRoleSpec +
sync_registered_roles_to_db) doesn't exist yet — implies is currently
seeded only for the core.* hierarchy via _seed_core_roles in src/db.py.
Rewrote the Implies hierarchy and Module-author workflow sections to
document what's actually supported in 0.11.4 and what a future change
would need to add. The "for cross-module hierarchies, register each
level + grant both" pattern works today.
Tests: 322 in the auth/role/scheduler/UI/password test set passed,
0 regressions.
* fix(db): _seed_core_roles actually runs on every connect (Devin review #4)
Devin flagged that the docstring on `_seed_core_roles` promised per-connect
execution as a safety net for accidental DELETEs and in-code seed changes,
but the only call sites lived inside `if current < SCHEMA_VERSION:` — so
once a DB was on v9 the function never ran again, and the docstring lied.
Picked option (b) from the review (actually call it on every startup) over
option (a) (fix the docstring) because the safety net is genuinely useful:
- recovery from accidental admin DELETE on internal_roles,
- in-code _CORE_ROLES_SEED tweaks (display_name/description/implies)
ship without a manual SQL deploy,
- fresh installs and migrations stop needing their own seed call sites.
Tail call gated by `get_schema_version(conn) <= SCHEMA_VERSION` so the
future-version-is-noop rollback contract still holds — a v9 binary won't
touch a DB that's been upgraded past v9.
Test coverage: new TestSeedCoreRolesSafetyNet class (3 tests) pins the
three contracts — deleted row re-seeds, mutated display_name re-syncs
from in-code seed, applied_at on schema_version doesn't churn on
already-current DBs. Existing TestMigrationSafety::test_future_version_is_noop
still passes (verified against the gating logic).
- KeboolaClient has test_connection() not verify_token() — every
/api/admin/configure call for Keboola was failing with AttributeError
- Renamed data_source.keboola.url → stack_url to match
instance.yaml.example (line 106) and avoid user confusion
663 tests pass.
- CalVer retry loop now exits with error if all 5 attempts fail
(prevents pushing Docker image with unclaimed version tag)
- discover_tables endpoint reads data_source.keboola.url (consistent
with configure_instance and _discover_and_register_tables)
- Pre-migration snapshot flushes WAL via CHECKPOINT before copying
and copies .wal file if it still exists after flush
663 tests pass.
- _discover_and_register_tables reads from data_source.keboola.url
(matches what /api/admin/configure writes) instead of top-level
keboola.url which doesn't exist
- CalVer: claim git tag BEFORE Docker build with retry loop (up to 5
attempts). Prevents race where two concurrent CI runs get same N.
Git tag acts as a distributed lock for version uniqueness.
663 tests pass.
- Config writes to DATA_DIR/state/instance.yaml (writable) instead of
CONFIG_DIR (read-only :ro in Docker)
- instance_config.py checks DATA_DIR/state/ first, then falls back to
CONFIG_DIR for backward compat
- CalVer counter is now global across channels (*-YYYY.MM.*) per spec
- Keboola error messages sanitized — log full error, return generic msg
- chmod in secrets.py wrapped in try/except for Windows compat
- Setup wizard JS handles 401 (expired JWT) with user-facing message
- deploy.yml changed to workflow_dispatch only (no duplicate test runs)
- Smoke test uses docker-compose.prod.yml + AGNES_TAG instead of sed
- docker-compose.prod.yml uses ${AGNES_TAG:-stable} env var
663 tests pass. 8 E2E verification tests pass.
Vojtech
