agnes-the-ai-analyst/app/api/admin.py
ZdenekSrotyr dc8a9275e6 fix: address Devin review round 3 — retry exhaustion, discover path, WAL snapshot
- CalVer retry loop now exits with error if all 5 attempts fail
  (prevents pushing Docker image with unclaimed version tag)
- discover_tables endpoint reads data_source.keboola.url (consistent
  with configure_instance and _discover_and_register_tables)
- Pre-migration snapshot flushes WAL via CHECKPOINT before copying
  and copies .wal file if it still exists after flush

663 tests pass.
2026-04-10 14:11:17 +02:00

365 lines
13 KiB
Python

"""Admin endpoints — table discovery, registry management, instance configuration."""
import logging
import os
import uuid
from pathlib import Path
from fastapi import APIRouter, Depends, HTTPException
from pydantic import BaseModel
from typing import Optional, List
import duckdb
from app.auth.dependencies import require_role, Role, _get_db
from src.repositories.table_registry import TableRegistryRepository
logger = logging.getLogger(__name__)
router = APIRouter(prefix="/api/admin", tags=["admin"])
class RegisterTableRequest(BaseModel):
name: str
folder: Optional[str] = None
sync_strategy: str = "full_refresh"
primary_key: Optional[str] = None
description: Optional[str] = None
source_type: Optional[str] = None
bucket: Optional[str] = None
source_table: Optional[str] = None
query_mode: str = "local"
sync_schedule: Optional[str] = None
profile_after_sync: bool = True
class UpdateTableRequest(BaseModel):
name: Optional[str] = None
sync_strategy: Optional[str] = None
primary_key: Optional[str] = None
description: Optional[str] = None
source_type: Optional[str] = None
bucket: Optional[str] = None
source_table: Optional[str] = None
query_mode: Optional[str] = None
sync_schedule: Optional[str] = None
profile_after_sync: Optional[bool] = None
class ConfigureRequest(BaseModel):
data_source: str # "keboola" | "bigquery" | "local"
keboola_token: Optional[str] = None
keboola_url: Optional[str] = None
bigquery_project: Optional[str] = None
bigquery_location: Optional[str] = None
instance_name: Optional[str] = None
allowed_domain: Optional[str] = None
@router.get("/discover-tables")
async def discover_tables(
user: dict = Depends(require_role(Role.ADMIN)),
):
"""Discover all available tables from the configured data source."""
try:
from app.instance_config import get_data_source_type
source_type = get_data_source_type()
if source_type == "keboola":
from connectors.keboola.client import KeboolaClient
from app.instance_config import get_value
url = get_value("data_source", "keboola", "url", default="")
token_env = get_value("data_source", "keboola", "token_env", default="KEBOOLA_STORAGE_TOKEN")
token = os.environ.get(token_env, "") if token_env else ""
if not token:
token = os.environ.get("KEBOOLA_STORAGE_TOKEN", "")
client = KeboolaClient(token=token, url=url)
tables = client.discover_all_tables()
return {"tables": tables, "count": len(tables), "source": "keboola"}
else:
return {"tables": [], "count": 0, "source": source_type, "error": "Discovery not implemented for this source"}
except Exception as e:
raise HTTPException(status_code=500, detail=f"Discovery failed: {e}")
@router.get("/registry")
async def list_registry(
user: dict = Depends(require_role(Role.ADMIN)),
conn: duckdb.DuckDBPyConnection = Depends(_get_db),
):
"""Get full table registry."""
repo = TableRegistryRepository(conn)
tables = repo.list_all()
return {"tables": tables, "count": len(tables)}
@router.post("/register-table", status_code=201)
async def register_table(
request: RegisterTableRequest,
user: dict = Depends(require_role(Role.ADMIN)),
conn: duckdb.DuckDBPyConnection = Depends(_get_db),
):
"""Register a new table in the system."""
if not request.name or not request.name.strip():
raise HTTPException(status_code=422, detail="Table name cannot be empty")
repo = TableRegistryRepository(conn)
table_id = request.name.strip().lower().replace(" ", "_")
if repo.get(table_id):
raise HTTPException(status_code=409, detail=f"Table '{table_id}' already registered")
repo.register(
id=table_id,
name=request.name,
folder=request.folder,
sync_strategy=request.sync_strategy,
primary_key=request.primary_key,
description=request.description,
registered_by=user.get("email"),
source_type=request.source_type,
bucket=request.bucket,
source_table=request.source_table,
query_mode=request.query_mode,
sync_schedule=request.sync_schedule,
profile_after_sync=request.profile_after_sync,
)
return {"id": table_id, "name": request.name, "status": "registered"}
@router.put("/registry/{table_id}")
async def update_table(
table_id: str,
request: UpdateTableRequest,
user: dict = Depends(require_role(Role.ADMIN)),
conn: duckdb.DuckDBPyConnection = Depends(_get_db),
):
"""Update a registered table's configuration."""
repo = TableRegistryRepository(conn)
if not repo.get(table_id):
raise HTTPException(status_code=404, detail="Table not found")
updates = {k: v for k, v in request.model_dump().items() if v is not None}
if updates:
existing = repo.get(table_id)
merged = {k: v for k, v in existing.items() if k != "registered_at"}
merged.update(updates)
merged.pop("id", None) # avoid duplicate id kwarg
repo.register(id=table_id, **merged)
return {"id": table_id, "updated": list(updates.keys())}
@router.delete("/registry/{table_id}", status_code=204)
async def unregister_table(
table_id: str,
user: dict = Depends(require_role(Role.ADMIN)),
conn: duckdb.DuckDBPyConnection = Depends(_get_db),
):
"""Unregister a table from the system."""
repo = TableRegistryRepository(conn)
if not repo.get(table_id):
raise HTTPException(status_code=404, detail="Table not found")
repo.unregister(table_id)
@router.post("/configure")
async def configure_instance(
request: ConfigureRequest,
user: dict = Depends(require_role(Role.ADMIN)),
):
"""Configure data source and instance settings via API.
Writes config to instance.yaml and persists secrets to .env_overlay.
AI agents and the /setup wizard use this instead of manual file editing.
"""
import yaml
if request.data_source not in ("keboola", "bigquery", "local"):
raise HTTPException(status_code=400, detail="data_source must be 'keboola', 'bigquery', or 'local'")
# Validate credentials if provided
if request.data_source == "keboola":
if not request.keboola_token or not request.keboola_url:
raise HTTPException(status_code=400, detail="keboola_token and keboola_url are required for Keboola data source")
try:
from connectors.keboola.client import KeboolaClient
client = KeboolaClient(token=request.keboola_token, url=request.keboola_url)
client.verify_token()
except Exception as e:
logger.error("Keboola connection validation failed: %s", e)
raise HTTPException(status_code=400, detail="Keboola connection failed. Check your token and URL.")
elif request.data_source == "bigquery":
if not request.bigquery_project:
raise HTTPException(status_code=400, detail="bigquery_project is required for BigQuery data source")
# Write instance.yaml to DATA_DIR/state/ (writable Docker volume),
# NOT to CONFIG_DIR which is mounted read-only in Docker.
data_dir = Path(os.environ.get("DATA_DIR", "./data"))
config_path = data_dir / "state" / "instance.yaml"
# Load existing API-generated config, or fall back to read-only CONFIG_DIR config
existing = {}
if config_path.exists():
try:
existing = yaml.safe_load(config_path.read_text()) or {}
except Exception:
existing = {}
else:
# Try loading from read-only config as base
ro_path = Path(os.environ.get("CONFIG_DIR", "./config")) / "instance.yaml"
if ro_path.exists():
try:
existing = yaml.safe_load(ro_path.read_text()) or {}
except Exception:
existing = {}
# Merge instance settings
if request.instance_name:
existing.setdefault("instance", {})["name"] = request.instance_name
if request.allowed_domain:
existing.setdefault("auth", {})["allowed_domain"] = request.allowed_domain
# Merge data source config (secrets as env var references)
existing["data_source"] = {"type": request.data_source}
if request.data_source == "keboola":
existing["data_source"]["keboola"] = {
"url": request.keboola_url,
"token_env": "KEBOOLA_STORAGE_TOKEN",
}
elif request.data_source == "bigquery":
existing["data_source"]["bigquery"] = {
"project": request.bigquery_project,
"location": request.bigquery_location or "us",
}
# Write to writable data volume
config_path.parent.mkdir(parents=True, exist_ok=True)
config_path.write_text(yaml.dump(existing, default_flow_style=False, sort_keys=False))
logger.info("Wrote instance config to %s", config_path)
# Persist secrets to .env_overlay (in data volume, never in git)
secrets_to_persist = {}
if request.keboola_token:
secrets_to_persist["KEBOOLA_STORAGE_TOKEN"] = request.keboola_token
if request.keboola_url:
secrets_to_persist["KEBOOLA_STACK_URL"] = request.keboola_url
if secrets_to_persist:
data_dir = Path(os.environ.get("DATA_DIR", "./data"))
overlay_path = data_dir / "state" / ".env_overlay"
overlay_path.parent.mkdir(parents=True, exist_ok=True)
# Merge with existing overlay
existing_overlay = {}
if overlay_path.exists():
for line in overlay_path.read_text().splitlines():
if "=" in line and not line.startswith("#"):
k, v = line.split("=", 1)
existing_overlay[k.strip()] = v.strip()
existing_overlay.update(secrets_to_persist)
overlay_path.write_text(
"\n".join(f"{k}={v}" for k, v in existing_overlay.items()) + "\n"
)
try:
overlay_path.chmod(0o600)
except OSError:
pass
logger.info("Persisted %d secrets to .env_overlay", len(secrets_to_persist))
# Inject into current process environment
for k, v in secrets_to_persist.items():
os.environ[k] = v
# Invalidate cached instance config so next read picks up changes
import app.instance_config as ic
ic._instance_config = None
return {
"status": "ok",
"data_source": request.data_source,
"connection": "verified" if request.data_source != "local" else "local",
}
def _discover_and_register_tables(conn: duckdb.DuckDBPyConnection, user_email: str) -> dict:
"""Discover tables from configured source and register them. Shared logic for API and sync."""
from app.instance_config import get_data_source_type, get_value
source_type = get_data_source_type()
if source_type != "keboola":
return {"registered": 0, "skipped": 0, "errors": 0, "tables": [], "source": source_type}
from connectors.keboola.client import KeboolaClient
# Read from data_source.keboola (matches what /api/admin/configure writes)
url = get_value("data_source", "keboola", "url", default="")
token_env = get_value("data_source", "keboola", "token_env", default="KEBOOLA_STORAGE_TOKEN")
token = os.environ.get(token_env, "") if token_env else ""
if not token:
token = os.environ.get("KEBOOLA_STORAGE_TOKEN", "")
client = KeboolaClient(token=token, url=url)
discovered = client.discover_all_tables()
repo = TableRegistryRepository(conn)
registered = 0
skipped = 0
errors = 0
table_names = []
for table in discovered:
table_id = table.get("id", "").strip().lower().replace(".", "_").replace(" ", "_")
if not table_id:
errors += 1
continue
if repo.get(table_id):
skipped += 1
continue
try:
# Parse bucket from table ID (format: in.c-bucket.table_name)
parts = table.get("id", "").split(".")
bucket = parts[1] if len(parts) > 1 else ""
source_table = parts[2] if len(parts) > 2 else table.get("name", "")
repo.register(
id=table_id,
name=table.get("name", table_id),
source_type="keboola",
bucket=bucket,
source_table=source_table,
query_mode="local",
registered_by=user_email,
description=f"Auto-discovered from Keboola: {table.get('id', '')}",
)
registered += 1
table_names.append(table_id)
except Exception as e:
logger.warning("Failed to register %s: %s", table_id, e)
errors += 1
return {
"registered": registered,
"skipped": skipped,
"errors": errors,
"tables": table_names,
"source": "keboola",
}
@router.post("/discover-and-register")
async def discover_and_register(
user: dict = Depends(require_role(Role.ADMIN)),
conn: duckdb.DuckDBPyConnection = Depends(_get_db),
):
"""Discover tables from configured source and auto-register them.
Combines discover-tables + register-table into one call.
Skips already-registered tables. Used by /setup wizard and AI agents.
"""
try:
result = _discover_and_register_tables(conn, user.get("email", "admin"))
return result
except Exception as e:
raise HTTPException(status_code=500, detail=f"Discovery and registration failed: {e}")