ed3e8337ab
* fix(jira): harden _remote_links fetch — transient API failure no longer wipes parquet rows Pre-fix, all three fetch_remote_links call sites (service.py, scripts/backfill.py, scripts/backfill_remote_links.py) silently returned [] on 401/403/429/5xx or httpx.RequestError. Callers overlaid that [] onto cached issue JSON, and transform_remote_links interpreted the empty list as 'issue legitimately has no remote links — delete existing rows', so a transient Jira auth blip permanently wiped remote-link history. Now: - Every fetch site raises JiraFetchError on non-200/non-404 status, on httpx.RequestError, and on the 'service not configured' path. - Overlay sites skip the _remote_links key when fetch raises, leaving it ABSENT (not present-but-empty). - transform_remote_links returns None for absent/null keys (preserve existing rows) vs [] (legitimate empty — wipe). - Both consumers (batch transform_all, incremental transform_single_issue) honor the new contract. - End-to-end tests test_incremental_preserves_remote_links_when_overlay_absent and test_incremental_wipes_remote_links_when_overlay_present_but_empty lock both halves. Adversarial-review fixes bundled: - service.py: unconfigured-service path now raises JiraFetchError instead of returning [] (a webhook can arrive while API creds are missing — HMAC verification uses a separate JIRA_WEBHOOK_SECRET). Regression guard test_raises_when_unconfigured added. - consistency_check.py: AUTO_FIX_THRESHOLD bumped 10 -> 20 to cover typical SLA-poller hiccups before escalating to ERROR. - CLAUDE.md: connectors/jira/transform.py removed from 'Files NOT to modify' (overlay-contract change required touching it; module remains sensitive but is no longer off-limits). * release: 0.54.19 — jira remote_links hardening (transient API failure no longer wipes parquet rows)
187 lines
8.2 KiB
TOML
187 lines
8.2 KiB
TOML
[project]
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name = "agnes-the-ai-analyst"
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version = "0.54.19"
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description = "Agnes — AI Data Analyst platform for AI analytical systems"
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requires-python = ">=3.11,<3.14"
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license = "MIT"
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readme = "README.md"
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dependencies = [
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# Core database
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# 1.5.2 fixes a FK-dependency regression that affected ALTER TABLE on
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# tables referenced by other tables — broke the test_db migration
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# ladder replay on 1.5.1. CI runs 1.5.2; local devs need it too.
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"duckdb>=1.5.2",
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# Web framework (FastAPI)
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"fastapi>=0.115.0",
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"uvicorn[standard]>=0.32.0",
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"python-multipart>=0.0.27",
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"jinja2>=3.1.0",
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"starlette>=0.41.0",
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# Authentication
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"PyJWT>=2.8.0",
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"itsdangerous>=2.1.0",
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"authlib>=1.6.12",
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"argon2-cffi>=23.1.0",
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# HTTP client. `h2` enables HTTP/2 multiplexing for the persistent
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# CLI client used by `agnes pull` (one TCP connection serves N
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# concurrent parquet streams + range chunks). `cli/client.py`
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# gracefully falls back to HTTP/1.1 if h2 is missing, so this
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# extra is for performance, not correctness.
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"httpx>=0.27.0",
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"h2>=4.1.0",
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# CLI
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"typer>=0.12.0",
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"rich>=13.0.0",
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# Configuration
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"python-dotenv>=1.0.0",
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"pyyaml>=6.0",
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# Data processing
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"pandas>=2.0.0",
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"pyarrow>=12.0.0",
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"pytz>=2024.1",
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# SQL parsing — server-side WHERE validator for /api/v2/scan (app/api/where_validator.py)
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# Minimum 30.x — older versions had walk() yielding (node, parent, key)
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# tuples instead of expression nodes, which would silently bypass the
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# WHERE-validator structural checks (isinstance(tuple, exp.Subquery)
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# is always False). 30.x yields nodes directly.
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"sqlglot>=30.0.0",
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# Data source connectors
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"google-cloud-bigquery>=3.0.0",
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"google-cloud-bigquery-storage>=2.0.0",
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# Google Workspace Cloud Identity / Admin SDK (Workspace group membership sync)
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"google-api-python-client>=2.0.0",
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# Profiler visualizations
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"matplotlib>=3.8.0",
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"numpy>=1.24.0",
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# Claude Code marketplace endpoint — pure-Python git server mounted in FastAPI
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"dulwich>=0.22.0",
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"a2wsgi>=1.10.0",
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# In-process TTL cache for marketplace etag (transitively present via
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# google-auth, declared explicitly here because we depend on it directly).
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"cachetools>=5.3.0",
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# Per-IP rate limiting on auth endpoints (#45). In-process counters by
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# default — fine for single-replica deploys. Multi-replica rollouts can
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# swap the storage backend via slowapi's `storage_uri` (Redis, Memcached).
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"slowapi>=0.1.9",
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# LLM provider SDKs — core (not dev) because connectors/llm/*_provider.py
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# is imported by services/{corporate_memory, verification_detector} which
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# the scheduler drives in production. Promoted from [dev] in #176 to fix
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# ModuleNotFoundError boot loops on default Compose deploys.
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"anthropic>=0.30.0",
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"openai>=1.30.0",
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# Keboola Storage API SDK — used by:
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# - `connectors/keboola/client.py` for admin-side bucket / table list
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# (consumed from `app/api/admin.py` discover-and-register, table
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# metadata refresh).
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# Extraction itself uses the lightweight `connectors/keboola/storage_api.py`
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# module (export-async + signed-URL download) which talks to Storage API
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# directly via `requests` — no SDK dependency on the data-path side. The
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# SDK stays for the metadata reads.
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#
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# NOTE: kbcstorage moved to the [server] extra below — see the rationale
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# in [project.optional-dependencies].server. CLI wheels installed via
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# `uv tool install` deliberately ship without it.
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"sse-starlette>=2.0",
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# Optional observability — pure-Python, no compilation. Lazily initialized
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# in src/observability/posthog_client.py and only emits events when
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# POSTHOG_API_KEY is set in the environment. With the key unset the
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# integration is fully off (no network, no init). See docs/observability.md.
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"posthog>=3.7.0",
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# Rust-backed (ammonia) HTML sanitizer for admin-edited rich content
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# (news intro + body, curated marketplace-metadata.json descriptions).
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# Allowlist-based with per-tag attribute scoping; closes the bypass
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# shapes the legacy regex sanitizer in src/welcome_template.py was
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# vulnerable to. Pre-built wheels published for all supported
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# (mac/linux/windows × arm64/x86_64) targets.
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"nh3>=0.2",
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# CommonMark markdown renderer for curator-authored marketplace-metadata.json
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# rich content (plugin description / sample_interaction.assistant). Pure
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# Python, no compilation. Rendered output is funneled through nh3 above.
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"markdown-it-py>=3.0",
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# Cross-platform advisory file locking for the `agnes push` single-instance
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# guard. Wraps fcntl.flock on POSIX and msvcrt.locking on Windows behind
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# a uniform API; OS releases the lock automatically on process exit (no
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# stale-lock detection required). Used by cli/lib/push_lock.py.
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"filelock>=3.13,<4",
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# Transitive dependency hardened directly to dodge 5 dependabot advisories
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# (4 high, 1 medium) flagged on urllib3<2.7.0: cross-origin sensitive
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# header leak on proxied low-level redirects, decompression-bomb bypass
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# + unbounded decompression chain on the streaming API, redirects-when-
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# retries-disabled. The `[server]` extra below adds kbcstorage which
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# transitively caps urllib3<2.0.0; `[tool.uv] override-dependencies`
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# forces 2.7+ in workspace installs (Dockerfile + dev). Wheel consumers
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# who install only the CLI (`uv tool install <wheel>`) get no kbcstorage
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# and no conflict.
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"urllib3>=2.7.0",
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]
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[project.optional-dependencies]
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# Server-side connectors. The CLI wheel does NOT need these — analysts who
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# `uv tool install` the wheel never reach a kbcstorage import. Splitting it
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# out keeps the wheel's METADATA `Requires-Dist` set free of the
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# `kbcstorage<=0.9.5 → urllib3<2.0.0` cap that conflicts with our
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# `urllib3>=2.7.0` security pin under any fresh resolver context (where
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# `[tool.uv] override-dependencies` does NOT apply — see comment on
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# [tool.uv] below). Server install pulls it in via Dockerfile's
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# `uv pip install --system --no-cache .[server]`.
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server = [
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"kbcstorage>=0.9.0",
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]
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observability = [
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# Already in base dependencies — listed here so operators who want to
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# be explicit can `pip install -e ".[observability]"` and signal intent.
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"posthog>=3.7.0",
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]
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dev = [
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"pytest>=9.0.0",
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"pytest-timeout>=2.0.0",
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"pytest-xdist>=3.0.0",
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# pytest-split shards the suite across parallel CI jobs (`--splits N
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# --group K`); see the `test-shard` matrix in `.github/workflows/ci.yml`.
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# Balanced by the committed `.test_durations` file.
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"pytest-split>=0.9.0",
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"faker>=24.0.0",
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# jsonschema validates the corporate-memory extraction-tool golden fixtures
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# under tests/test_corporate_memory_v1.py (extraction.json, correction.json,
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# confidence_calibration.json). Production code does not depend on it.
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"jsonschema>=4.0.0",
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# FastAPI debug toolbar — gated behind DEBUG=1 env var in app/main.py.
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# Provides per-request panels (headers, routes, timer, profiling, etc.)
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# for local development. Never loaded in production (no DEBUG=1 there).
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"fastapi-debug-toolbar>=0.6.3",
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]
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[project.scripts]
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agnes = "cli.main:main"
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[build-system]
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requires = ["hatchling"]
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build-backend = "hatchling.build"
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[tool.hatch.build.targets.wheel]
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packages = ["app", "src", "connectors", "cli", "services", "config"]
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[tool.ruff]
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line-length = 120
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target-version = "py313"
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[tool.uv]
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dev-dependencies = [
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"pytest>=9.0.0",
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"pytest-timeout>=2.0.0",
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"pytest-xdist>=3.0.0",
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"pytest-split>=0.9.0",
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"faker>=24.0.0",
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"anthropic>=0.30.0",
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"openai>=1.30.0",
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"fastapi-debug-toolbar>=0.6.3",
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]
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# Override the urllib3<2.0.0 ceiling kbcstorage 0.9.5 declares (upstream
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# hasn't relaxed it as of 2026-05-12 but the SDK works fine against
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# urllib3 2.x in practice — we only use `Client` + `Tables` from it and
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# both go through `requests`, which natively supports both lines). Lets
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# the resolver pick a urllib3 line that closes Dependabot advisories
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# CVE-2024-37891 / CVE-2025-{xxx}. See `urllib3>=2.7.0` in [project]
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# dependencies above for the security rationale.
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override-dependencies = ["urllib3>=2.7.0"]
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