Follow-up to the RBAC v13 + marketplace work in the parent commit. Addresses
deferred Devin findings, gemini-flagged blockers, and adds three guard rails.
== Schema v14 — FK constraints on user_group_members + resource_grants ==
Adds DuckDB foreign-key constraints so cascade deletes can no longer leave
orphaned member / grant rows pointing at a deleted group_id (which were
relying on application-level cascades up to v13). Migration is RENAME →
CREATE-with-FK → INSERT → DROP, wrapped in BEGIN TRANSACTION so a partial
failure rolls back without leaving the DB at a half-applied schema.
== AGNES_ENABLE_TABLE_GRANTS feature flag (default off) ==
ResourceType.TABLE was shipped in the parent commit as listing-only — admins
can record grants but runtime enforcement still flows through legacy
dataset_permissions. To avoid the misleading-UX surface area, the chip is
hidden from /admin/access and POST /api/admin/grants returns 422 with the
env-var name in detail until the operator opts in. Existing TABLE rows in
resource_grants stay listable + deletable so cleanup is never blocked.
Helpers: is_resource_type_enabled(rt), enabled_resource_types().
== Break-glass admin CLI ==
`da admin break-glass <user>` adds the user to the Admin user_group with
source='system_seed' regardless of RBAC state. Bypasses authentication —
relies on filesystem access to ${DATA_DIR}/state/system.duckdb implying
host-level trust. Recovery path when the operator has locked themselves
out of /admin/access.
== Devin round-2 fixes (deferred on b4ec4c4) ==
- src/repositories/user_groups.py — narrow update() guard from blocking any
mutation on system groups to blocking name change only. Description edits
now pass through. Endpoint pre-check stays as defense-in-depth. Prior
behavior surfaced as a misleading 409 'Cannot rename a system group' on
description-only PATCH.
- app/api/access.py:delete_group — wrap cascade DELETEs + repo.delete in
BEGIN TRANSACTION / COMMIT / ROLLBACK. Prevents orphan rows if any
DELETE fails after the user_groups row is gone.
- app/marketplace_server/{packager,router}.py — split compute_etag_for_user()
from build_zip(); router resolves etag first and 304-shorts before any
file read or ZIP_DEFLATED. In-process cachetools.TTLCache (default 120s,
env-tunable via AGNES_MARKETPLACE_ETAG_TTL, set 0 to disable).
invalidate_etag_cache() called by sync to force re-hash on content drift.
== Tests ==
- TestTableGrantsFeatureFlag (4 cases) — endpoint exclude/include, grant
rejection/acceptance under the flag.
- test_v12_to_v13_finalize_rollback_on_failure — destructive: monkeypatches
_seed_system_groups to raise mid-transaction, asserts schema_version stays
at 12, legacy tables intact, new tables empty (rollback fired). Then
restores the real function and asserts the retry succeeds.
- test_update_system_group_description_allowed,
test_update_system_group_same_name_no_op — repo-level coverage of the
narrowed guard.
|
||
|---|---|---|
| .github/workflows | ||
| app | ||
| cli | ||
| config | ||
| connectors | ||
| dev_docs | ||
| docs | ||
| infra | ||
| scripts | ||
| services | ||
| src | ||
| tests | ||
| .dockerignore | ||
| .gitignore | ||
| ARCHITECTURE.md | ||
| Caddyfile | ||
| CHANGELOG.md | ||
| CLAUDE.md | ||
| docker-compose.ci.yml | ||
| docker-compose.host-mount.yml | ||
| docker-compose.local-dev.yml | ||
| docker-compose.override.yml | ||
| docker-compose.prod.yml | ||
| docker-compose.test.yml | ||
| docker-compose.tls.yml | ||
| docker-compose.yml | ||
| Dockerfile | ||
| LICENSE | ||
| Makefile | ||
| pyproject.toml | ||
| pytest.ini | ||
| README.md | ||
| uv.lock | ||
Agnes — AI Data Analyst
Agnes is an open-source data distribution platform for AI analytical systems. It extracts data from configured sources into DuckDB, serves it via a FastAPI backend, and distributes Parquet files to analysts who query them locally using Claude Code and DuckDB.
Each data source produces a self-describing extract.duckdb file. The SyncOrchestrator attaches all extract databases into a master analytics.duckdb, making every table available through a unified view layer without copying data unnecessarily.
Architecture: extract.duckdb Contract
Every connector produces the same output structure:
/data/extracts/{source_name}/
├── extract.duckdb ← _meta table + views
└── data/ ← parquet files (local sources only)
The orchestrator scans /data/extracts/*/extract.duckdb, attaches each into analytics.duckdb, and creates master views.
┌──────────────┐ ┌──────────────┐ ┌──────────────┐
│ Keboola │ │ BigQuery │ │ Jira │
│ extractor │ │ extractor │ │ webhooks │
│ (DuckDB ext) │ │ (remote BQ) │ │ (incremental)│
└──────┬───────┘ └──────┬───────┘ └──────┬───────┘
│ │ │
▼ ▼ ▼
extract.duckdb extract.duckdb extract.duckdb
+ data/*.parquet (views → BQ) + data/*.parquet
│ │ │
└─────────────────┼─────────────────┘
▼
SyncOrchestrator.rebuild()
ATTACH → master views in analytics.duckdb
│
┌──────────┼──────────┐
▼ ▼ ▼
FastAPI CLI
(serve) (da sync)
Supported Data Sources
| Source | Mode | Description |
|---|---|---|
| Keboola | Batch pull | DuckDB Keboola extension downloads tables to Parquet on a schedule |
| BigQuery | Remote attach | DuckDB BQ extension; queries execute in BigQuery, no local download |
| Jira | Real-time push | Webhook receiver updates Parquet files incrementally |
Adding a new source means creating connectors/<name>/extractor.py that produces extract.duckdb with a _meta table (table_name, description, rows, size_bytes, extracted_at, query_mode). The orchestrator attaches it automatically.
Quick Start with Docker
# Clone the repository
git clone https://github.com/keboola/agnes-the-ai-analyst.git
cd agnes-the-ai-analyst
# Copy and edit configuration
cp config/instance.yaml.example config/instance.yaml
cp config/.env.template .env
# Edit both files for your environment
# Start the app and scheduler
docker compose up
# Start with all optional services (Telegram bot, etc.)
docker compose --profile full up
# Start with TLS (Caddy on :443 with corporate-CA certs from /data/state/certs)
docker compose -f docker-compose.yml -f docker-compose.prod.yml -f docker-compose.tls.yml \
--profile tls up -d
Once running, the FastAPI app is available at http://localhost:8000 (or https://$DOMAIN in TLS mode). See docs/DEPLOYMENT.md for cert provisioning + auto-rotation via scripts/ops/agnes-tls-rotate.sh. Trigger a manual sync:
curl -X POST http://localhost:8000/api/sync/trigger
Development Setup
# Create and activate virtual environment
python3 -m venv .venv && source .venv/bin/activate
# Install dependencies
uv pip install ".[dev]"
# Run FastAPI locally with hot reload
uvicorn app.main:app --reload
# Run the test suite
pytest tests/ -v
Project Structure
├── src/ # Core engine
│ ├── db.py # DuckDB schema (system.duckdb, analytics.duckdb)
│ ├── orchestrator.py # SyncOrchestrator — ATTACHes extract.duckdb files
│ ├── repositories/ # DuckDB-backed CRUD (sync_state, table_registry, users, etc.)
│ ├── profiler.py # Data profiling
│ └── catalog_export.py # OpenMetadata catalog export
├── app/ # FastAPI application
│ ├── main.py # App setup, router registration
│ ├── api/ # REST API (sync, data, catalog, admin, auth)
│ ├── auth/ # Auth providers (Google OAuth, email magic link, desktop JWT)
│ └── web/ # HTML dashboard routes
├── connectors/ # Data source connectors (extract.duckdb contract)
│ ├── keboola/ # Keboola: extractor.py (DuckDB extension) + client.py (fallback)
│ ├── bigquery/ # BigQuery: extractor.py (remote-only via DuckDB BQ extension)
│ └── jira/ # Jira: webhook + incremental parquet → extract.duckdb
├── cli/ # CLI tool (`da sync`, `da query`, `da admin`)
├── services/ # Standalone services (scheduler, telegram_bot, ws_gateway, etc.)
├── scripts/ # Utility + migration scripts
├── config/ # Configuration templates (instance.yaml.example)
├── docs/ # Documentation + metric YAML definitions
└── tests/ # Test suite (633 tests)
Configuration
| File | Purpose |
|---|---|
config/instance.yaml |
Instance-specific settings: branding, data source type, auth provider, Google domain |
.env |
Secrets and environment variables — never committed |
system.duckdb table_registry table |
Table definitions managed via POST /api/admin/tables/{id} or the web UI |
Copy the example to get started:
cp config/instance.yaml.example config/instance.yaml
See config/instance.yaml.example for all available options.
Documentation
- Hackathon TL;DR — condensed deploy + dev playbooks (for both humans and AI agents)
- Onboarding Guide — end-to-end Terraform deployment into a GCP project (recommended for production)
- Deployment Guide — chooses between Terraform and Docker Compose; covers OSS self-host
- Configuration Reference —
instance.yaml, env vars, per-instance options - Architecture — orchestrator, extractors, DB layout
- Quickstart — local development
Contributing
- Fork the repository and create a feature branch.
- Run
pytest tests/ -vto verify all tests pass before opening a pull request. - Keep commits focused and messages concise.
- Open a pull request against
mainwith a clear description of the change.
For bugs and feature requests, open a GitHub issue.
License
This project is licensed under the MIT License.