AI-Cognitive-Leap/agnes-the-ai-analyst
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Vojtech 0c9e172ce1
fix(init): chmod +x workspace hooks in OVERRIDE mode too (#359) 
`agnes init` ran `_chmod_workspace_hooks(workspace)` only in DEFAULT
mode (inside `if not override_active:`). The OVERRIDE path — used for
Initial-Workspace-Template seed-repo flows where the admin's template
repo is cloned into the workspace — silently skipped chmod.

When the seed repo's git checkout didn't preserve the +x bit
(filemode=false, archive extractions, FUSE/NFS mounts), hooks like
`.claude/hooks/skill-nudge/nudge.sh` and
`.claude/hooks/prompt-history/log-prompt.sh` landed non-executable
and every SessionStart fired `Permission denied`. The chmod helper
itself already recurses (`rglob`) so the subdir-scoped hook layouts
were covered — the bug was the call site.

Moved the call out of the override gate to a common step before the
first pull. Both DEFAULT and OVERRIDE paths now chmod hooks before
the first SessionStart can fire.
2026-05-19 18:45:45 +02:00
..
__init__.py
admin.py feat(stack): unified Browse + My Stack for Data Packages and Memory (v49 schema) (#333) 2026-05-19 15:00:15 +02:00
admin_activity.py Activity Center: audit log + telemetry + sessions + agnes_* tables (#278) 2026-05-12 22:41:19 +02:00
admin_ask.py Activity Center: audit log + telemetry + sessions + agnes_* tables (#278) 2026-05-12 22:41:19 +02:00
admin_data_package.py feat(stack): unified Browse + My Stack for Data Packages and Memory (v49 schema) (#333) 2026-05-19 15:00:15 +02:00
admin_memory_domain.py feat(stack): unified Browse + My Stack for Data Packages and Memory (v49 schema) (#333) 2026-05-19 15:00:15 +02:00
admin_metrics.py feat(cli): agnes admin metrics {import,export,validate} 2026-05-04 18:39:05 +02:00
admin_news.py feat(home): state-aware /home + /setup-advanced + schema v26 (#228) 2026-05-08 18:28:47 +02:00
admin_sessions.py Activity Center: audit log + telemetry + sessions + agnes_* tables (#278) 2026-05-12 22:41:19 +02:00
admin_store.py feat(flea): marketplace refactor — data model, attribution, UI unification (#342) 2026-05-19 02:32:41 +02:00
admin_usage.py Activity Center: audit log + telemetry + sessions + agnes_* tables (#278) 2026-05-12 22:41:19 +02:00
auth.py feat(web): consolidate the personal /me/* surface — /me/activity + /me/profile (#304) 2026-05-14 21:29:51 +02:00
capture_session.py Session capture queue, private session, and setup-prompt fixes (#242) 2026-05-11 13:31:16 +00:00
catalog.py hygiene: BQ error hint dispatch + catalog ENTITY column (#274) 2026-05-12 18:32:29 +00:00
describe.py release: 0.46.5 — agnes describe -n parses, server sanitizes NaN (#224) 2026-05-07 18:16:21 +02:00
diagnose.py feat(diagnose): role-aware overall status (#345 B) (#355) 2026-05-19 16:53:56 +02:00
disk_info.py chore(cli-rename): replace stale da verbs in active code paths 2026-05-04 21:10:43 +02:00
explore.py fix(cli): hint text 'Run: da sync' → 'Run: agnes pull' 2026-05-04 18:42:21 +02:00
init.py fix(init): chmod +x workspace hooks in OVERRIDE mode too (#359) 2026-05-19 18:45:45 +02:00
mark_private.py Session capture queue, private session, and setup-prompt fixes (#242) 2026-05-11 13:31:16 +00:00
marketplace.py feat(cli): agnes marketplace search/detail/add/remove + retire stale subcommands (#280) 2026-05-13 05:20:56 +00:00
memory_admin.py refactor(cli): hard-cutover env vars + config dir to AGNES_* 2026-05-04 16:35:44 +02:00
my_stack.py feat(cli): agnes marketplace search/detail/add/remove + retire stale subcommands (#280) 2026-05-13 05:20:56 +00:00
onboarded.py feat(home): state-aware /home + /setup-advanced + schema v26 (#228) 2026-05-08 18:28:47 +02:00
pull.py feat(stack): unified Browse + My Stack for Data Packages and Memory (v49 schema) (#333) 2026-05-19 15:00:15 +02:00
push.py Session capture queue, private session, and setup-prompt fixes (#242) 2026-05-11 13:31:16 +00:00
query.py feat(cli): --json alias for --format json + remote-query exit-code regression test (#345 C+D) (#353) 2026-05-19 16:39:46 +02:00
refresh_marketplace.py feat(cli): AGNES_MARKETPLACE_URL env override for refresh-marketplace --bootstrap (#345 A) (#354) 2026-05-19 16:47:26 +02:00
sample.py release: 0.52.0 — UX/hygiene round (5 fixes from 0.51.0 retro) 2026-05-12 15:09:14 +02:00
schema.py refactor(cli): hard-cutover env vars + config dir to AGNES_* 2026-05-04 16:35:44 +02:00
self_upgrade.py Session capture queue, private session, and setup-prompt fixes (#242) 2026-05-11 13:31:16 +00:00
server.py refactor(cli): hard-cutover env vars + config dir to AGNES_* 2026-05-04 16:35:44 +02:00
setup.py fix(cli): Windows console crash on cs-CZ codepage (port + broaden #172) 2026-05-04 20:45:29 +02:00
skills.py fix(cli): Windows console crash on cs-CZ codepage (port + broaden #172) 2026-05-04 20:45:29 +02:00
snapshot.py fix(snapshot): catch httpx transport errors in --estimate path 2026-05-04 20:36:30 +02:00
stack.py feat(stack): unified Browse + My Stack for Data Packages and Memory (v49 schema) (#333) 2026-05-19 15:00:15 +02:00
status.py fix(devin-review): stale-token override + status sessions counter + lock comment 2026-05-04 21:26:30 +02:00
statusline.py Session capture queue, private session, and setup-prompt fixes (#242) 2026-05-11 13:31:16 +00:00
store.py feat(cli): agnes marketplace search/detail/add/remove + retire stale subcommands (#280) 2026-05-13 05:20:56 +00:00
tokens.py fix: address Devin Review findings — incomplete renames + estimate guard 2026-05-04 20:05:06 +02:00