ed3e8337ab
* fix(jira): harden _remote_links fetch — transient API failure no longer wipes parquet rows Pre-fix, all three fetch_remote_links call sites (service.py, scripts/backfill.py, scripts/backfill_remote_links.py) silently returned [] on 401/403/429/5xx or httpx.RequestError. Callers overlaid that [] onto cached issue JSON, and transform_remote_links interpreted the empty list as 'issue legitimately has no remote links — delete existing rows', so a transient Jira auth blip permanently wiped remote-link history. Now: - Every fetch site raises JiraFetchError on non-200/non-404 status, on httpx.RequestError, and on the 'service not configured' path. - Overlay sites skip the _remote_links key when fetch raises, leaving it ABSENT (not present-but-empty). - transform_remote_links returns None for absent/null keys (preserve existing rows) vs [] (legitimate empty — wipe). - Both consumers (batch transform_all, incremental transform_single_issue) honor the new contract. - End-to-end tests test_incremental_preserves_remote_links_when_overlay_absent and test_incremental_wipes_remote_links_when_overlay_present_but_empty lock both halves. Adversarial-review fixes bundled: - service.py: unconfigured-service path now raises JiraFetchError instead of returning [] (a webhook can arrive while API creds are missing — HMAC verification uses a separate JIRA_WEBHOOK_SECRET). Regression guard test_raises_when_unconfigured added. - consistency_check.py: AUTO_FIX_THRESHOLD bumped 10 -> 20 to cover typical SLA-poller hiccups before escalating to ERROR. - CLAUDE.md: connectors/jira/transform.py removed from 'Files NOT to modify' (overlay-contract change required touching it; module remains sensitive but is no longer off-limits). * release: 0.54.19 — jira remote_links hardening (transient API failure no longer wipes parquet rows)
648 lines
22 KiB
Python
648 lines
22 KiB
Python
#!/usr/bin/env python3
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"""
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Jira Data Consistency Monitoring Script
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Validates data integrity by comparing three sources:
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1. Jira API (ground truth)
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2. Raw JSON files (/data/src_data/raw/jira/issues/*.json)
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3. Parquet files (/data/src_data/parquet/jira/issues/*.parquet)
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Automatically backfills small gaps (1-10 issues), alerts on large ones (11+).
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Runs every 30 minutes via systemd timer to detect webhook losses and transform failures.
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Usage:
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# Dry run (check only, no fixes)
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python -m connectors.jira.scripts.consistency_check --dry-run --max-age-days 7
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# Auto-fix mode (default)
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python -m connectors.jira.scripts.consistency_check --auto-fix --max-age-days 30
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# Weekly deep check (full history)
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python -m connectors.jira.scripts.consistency_check --auto-fix --max-age-days 365
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Environment variables (loaded from .env):
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JIRA_DOMAIN - Jira Cloud domain (e.g., your-org.atlassian.net)
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JIRA_EMAIL - Email for API authentication
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JIRA_API_TOKEN - API token from Atlassian
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JIRA_DATA_DIR - Directory for storing data (default: /data/src_data/raw/jira)
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"""
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import argparse
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import json
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import logging
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import os
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import subprocess
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import sys
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import tempfile
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import time
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from dataclasses import dataclass
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from datetime import datetime, timedelta, timezone
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from pathlib import Path
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import httpx
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from dotenv import load_dotenv
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# Try to import DuckDB for Parquet queries
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try:
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import duckdb
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HAS_DUCKDB = True
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except ImportError:
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HAS_DUCKDB = False
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logging.warning("DuckDB not available, Parquet validation will be skipped")
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from app.logging_config import setup_logging
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setup_logging(__name__)
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logger = logging.getLogger(__name__)
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@dataclass
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class Config:
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"""Configuration loaded from environment."""
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jira_domain: str
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jira_email: str
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jira_api_token: str
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raw_dir: Path
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parquet_dir: Path
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repo_dir: Path
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venv_python: Path
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@classmethod
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def from_env(cls) -> "Config":
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"""Load configuration from environment variables."""
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# Try to load .env file from common locations.
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# Customer-specific install paths (e.g. /opt/<deployment>/.env) can be
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# injected via the AGNES_ENV_FILE env var without editing this list.
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env_paths = [
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Path(os.environ["AGNES_ENV_FILE"]) if os.environ.get("AGNES_ENV_FILE") else None,
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Path.cwd() / ".env",
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Path(__file__).parent.parent / ".env",
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]
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env_paths = [p for p in env_paths if p is not None]
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for env_path in env_paths:
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if env_path.exists():
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load_dotenv(env_path)
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logger.info(f"Loaded environment from {env_path}")
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break
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# Validate required variables
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required = ["JIRA_DOMAIN", "JIRA_EMAIL", "JIRA_API_TOKEN"]
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missing = [var for var in required if not os.environ.get(var)]
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if missing:
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raise ValueError(f"Missing required environment variables: {', '.join(missing)}")
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raw_dir = Path(os.environ.get("JIRA_DATA_DIR", "/data/src_data/raw/jira"))
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parquet_dir = Path(os.environ.get("JIRA_PARQUET_DIR", "/data/src_data/parquet/jira"))
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# REPO_DIR / VENV_PYTHON have no sensible OSS default — operators
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# must export them when running this script outside an editable
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# checkout.
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repo_dir = Path(os.environ.get("REPO_DIR", str(Path(__file__).resolve().parents[3])))
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venv_python = Path(os.environ.get("VENV_PYTHON", sys.executable))
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return cls(
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jira_domain=os.environ["JIRA_DOMAIN"],
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jira_email=os.environ["JIRA_EMAIL"],
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jira_api_token=os.environ["JIRA_API_TOKEN"],
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raw_dir=raw_dir,
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parquet_dir=parquet_dir,
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repo_dir=repo_dir,
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venv_python=venv_python,
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)
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class JiraConsistencyChecker:
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"""Checks data consistency across Jira API, JSON, and Parquet."""
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# Grace period for new issues (avoid false positives from timing windows)
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GRACE_PERIOD_MINUTES = 5
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# Thresholds for auto-backfill
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AUTO_FIX_THRESHOLD = 20 # Auto-fix if ≤20 issues missing
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WARNING_THRESHOLD = 5 # Log WARNING if >5 issues
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# Jira API limits
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MAX_RESULTS_PER_PAGE = 100
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def __init__(self, config: Config):
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self.config = config
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self.base_url = f"https://{config.jira_domain}/rest/api/3"
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self.auth = (config.jira_email, config.jira_api_token)
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# Statistics
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self.stats = {
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"jira_api_count": 0,
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"raw_json_count": 0,
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"parquet_count": 0,
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"missing_in_json": [],
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"missing_in_parquet": [],
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"deleted_in_jira": 0,
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"auto_backfilled": [],
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"backfill_failed": [],
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"transform_failed": [],
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}
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def fetch_jira_keys(self, max_age_days: int = 30) -> set[str]:
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"""
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Query Jira API for all issue keys via JQL search.
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Args:
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max_age_days: Only fetch issues created in last N days
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Returns:
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Set of issue keys from Jira API (ground truth)
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"""
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# Calculate cutoff date with grace period
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cutoff = datetime.now(timezone.utc) - timedelta(days=max_age_days)
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grace_cutoff = datetime.now(timezone.utc) - timedelta(minutes=self.GRACE_PERIOD_MINUTES)
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# JQL: fetch issues created after cutoff, but not too recent (grace period)
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jira_project = os.environ.get("JIRA_PROJECT", "")
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project_clause = f'project = "{jira_project}" AND ' if jira_project else ""
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jql = (
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f"{project_clause}"
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f'created >= "{cutoff.strftime("%Y-%m-%d")}" '
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f'AND created <= "{grace_cutoff.strftime("%Y-%m-%d %H:%M")}"'
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)
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logger.info(f"Querying Jira API with JQL: {jql}")
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issue_keys = set()
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next_page_token = None
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while True:
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try:
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result = self._search_issues(jql, next_page_token)
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issues = result.get("issues", [])
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if not issues:
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break
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for issue in issues:
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issue_keys.add(issue["key"])
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# Check for next page
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next_page_token = result.get("nextPageToken")
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if not next_page_token:
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break
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# Respect rate limits
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time.sleep(0.1)
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except Exception as e:
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logger.error(f"Error querying Jira API: {e}")
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raise
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self.stats["jira_api_count"] = len(issue_keys)
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logger.info(f"Found {len(issue_keys)} issues from Jira API")
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return issue_keys
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def _search_issues(self, jql: str, next_page_token: str | None = None) -> dict:
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"""Execute JQL search with pagination."""
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url = f"{self.base_url}/search/jql"
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payload = {
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"jql": jql,
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"maxResults": self.MAX_RESULTS_PER_PAGE,
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"fields": ["key"], # Only need keys
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}
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if next_page_token:
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payload["nextPageToken"] = next_page_token
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with httpx.Client(timeout=60) as client:
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response = client.post(
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url,
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auth=self.auth,
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json=payload,
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headers={"Content-Type": "application/json"},
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)
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if response.status_code != 200:
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raise RuntimeError(f"Jira search failed: {response.status_code} - {response.text[:200]}")
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return response.json()
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def scan_json_keys(self) -> set[str]:
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"""
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List issue keys from raw JSON files.
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Excludes deleted issues (those with _deleted_at field).
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Returns:
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Set of issue keys from JSON files
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"""
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issues_dir = self.config.raw_dir / "issues"
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if not issues_dir.exists():
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logger.warning(f"Issues directory not found: {issues_dir}")
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return set()
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issue_keys = set()
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for json_file in issues_dir.glob("*.json"):
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try:
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with open(json_file) as f:
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data = json.load(f)
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# Skip deleted issues
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if data.get("_deleted_at"):
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continue
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issue_key = data.get("key")
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if issue_key:
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issue_keys.add(issue_key)
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else:
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logger.warning(f"JSON file missing 'key' field: {json_file}")
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except Exception as e:
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logger.warning(f"Error reading {json_file}: {e}")
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self.stats["raw_json_count"] = len(issue_keys)
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logger.info(f"Found {len(issue_keys)} issues in raw JSON")
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return issue_keys
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def scan_parquet_keys(self, month: str | None = None) -> set[str]:
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"""
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Query Parquet files for distinct issue keys using DuckDB.
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Args:
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month: Optional month filter (e.g., "2026-02")
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Returns:
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Set of issue keys from Parquet files
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"""
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if not HAS_DUCKDB:
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logger.warning("DuckDB not available, skipping Parquet validation")
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return set()
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issues_dir = self.config.parquet_dir / "issues"
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if not issues_dir.exists():
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logger.warning(f"Parquet directory not found: {issues_dir}")
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return set()
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# Build pattern for reading Parquet files
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if month:
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pattern = str(issues_dir / f"{month}.parquet")
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else:
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pattern = str(issues_dir / "*.parquet")
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try:
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con = duckdb.connect()
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result = con.execute(f"""
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SELECT DISTINCT issue_key
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FROM read_parquet('{pattern}')
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""").fetchall()
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issue_keys = {row[0] for row in result}
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self.stats["parquet_count"] = len(issue_keys)
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logger.info(f"Found {len(issue_keys)} issues in Parquet files")
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return issue_keys
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except Exception as e:
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logger.error(f"Error querying Parquet files: {e}")
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return set()
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def detect_discrepancies(
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self,
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jira_keys: set[str],
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json_keys: set[str],
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parquet_keys: set[str],
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) -> dict:
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"""
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Compare three sources and identify gaps.
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Args:
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jira_keys: Issue keys from Jira API
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json_keys: Issue keys from JSON files
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parquet_keys: Issue keys from Parquet files
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Returns:
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Dict with discrepancy lists
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"""
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missing_in_json = sorted(jira_keys - json_keys)
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missing_in_parquet = sorted(json_keys - parquet_keys)
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deleted_in_jira = len(json_keys - jira_keys)
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self.stats["missing_in_json"] = missing_in_json
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self.stats["missing_in_parquet"] = missing_in_parquet
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self.stats["deleted_in_jira"] = deleted_in_jira
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logger.info("Discrepancies detected:")
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logger.info(f" Missing in JSON (webhook loss): {len(missing_in_json)}")
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logger.info(f" Missing in Parquet (transform lag): {len(missing_in_parquet)}")
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logger.info(f" Deleted in Jira (expected): {deleted_in_jira}")
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return {
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"missing_in_json": missing_in_json,
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"missing_in_parquet": missing_in_parquet,
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"deleted_in_jira": deleted_in_jira,
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}
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def backfill_issues(self, issue_keys: list[str]) -> tuple[list[str], list[str]]:
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"""
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Backfill specific issues using jira_backfill.py script.
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Args:
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issue_keys: List of issue keys to backfill
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Returns:
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Tuple of (successful_keys, failed_keys)
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"""
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if not issue_keys:
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return [], []
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logger.info(f"Backfilling {len(issue_keys)} issues: {', '.join(issue_keys)}")
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# Build command for targeted backfill (force re-download to fix corrupted files)
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cmd = [
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str(self.config.venv_python),
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str(self.config.repo_dir / "connectors" / "jira" / "scripts" / "backfill.py"),
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"--issue-keys",
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",".join(issue_keys),
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"--no-skip-existing", # Force re-download even if files exist
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]
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try:
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result = subprocess.run(
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cmd,
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cwd=self.config.repo_dir,
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capture_output=True,
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text=True,
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timeout=600, # 10 minutes timeout
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)
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if result.returncode == 0:
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logger.info(f"Backfill completed successfully for {len(issue_keys)} issues")
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return issue_keys, []
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else:
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logger.error(f"Backfill failed: {result.stderr}")
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return [], issue_keys
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except subprocess.TimeoutExpired:
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logger.error("Backfill timed out after 10 minutes")
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return [], issue_keys
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except Exception as e:
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logger.error(f"Error running backfill: {e}")
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return [], issue_keys
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def transform_issues(self, issue_keys: list[str]) -> tuple[list[str], list[str]]:
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"""
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Trigger incremental Parquet transform for specific issues.
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Args:
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issue_keys: List of issue keys to transform
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Returns:
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Tuple of (successful_keys, failed_keys)
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"""
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if not issue_keys:
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return [], []
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logger.info(f"Transforming {len(issue_keys)} issues to Parquet")
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successful = []
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failed = []
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for issue_key in issue_keys:
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try:
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# Use subprocess to call transform module (ensures correct Python path)
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cmd = [
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str(self.config.venv_python),
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"-m",
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"connectors.jira.incremental_transform",
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issue_key,
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"--raw-dir",
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str(self.config.raw_dir),
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"--output-dir",
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str(self.config.parquet_dir),
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]
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result = subprocess.run(
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cmd,
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cwd=self.config.repo_dir,
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capture_output=True,
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text=True,
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timeout=120,
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)
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if result.returncode == 0:
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successful.append(issue_key)
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else:
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logger.error(f"Transform failed for {issue_key}: {result.stderr}")
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failed.append(issue_key)
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except subprocess.TimeoutExpired:
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logger.error(f"Transform timed out for {issue_key}")
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failed.append(issue_key)
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except Exception as e:
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logger.error(f"Transform error for {issue_key}: {e}")
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failed.append(issue_key)
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if successful:
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logger.info(f"Transformed {len(successful)} issues successfully")
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if failed:
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logger.warning(f"Transform failed for {len(failed)} issues: {', '.join(failed)}")
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return successful, failed
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def get_alert_level(self, missing_count: int) -> str:
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"""Determine alert level based on missing count."""
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if missing_count == 0:
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return "INFO"
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elif missing_count <= self.WARNING_THRESHOLD:
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return "INFO"
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elif missing_count <= self.AUTO_FIX_THRESHOLD:
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return "WARNING"
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else:
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return "ERROR"
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def run_check(
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self,
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max_age_days: int = 30,
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auto_fix: bool = True,
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dry_run: bool = False,
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) -> dict:
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"""
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Run consistency check and optionally auto-fix discrepancies.
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Args:
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max_age_days: Check issues created in last N days
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auto_fix: Enable automatic backfill for small gaps
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dry_run: Only check, don't fix anything
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Returns:
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Statistics dict with results
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"""
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start_time = time.time()
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logger.info("=" * 60)
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logger.info("Starting Jira consistency check")
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logger.info(f"Max age: {max_age_days} days")
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logger.info(f"Auto-fix: {auto_fix}")
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logger.info(f"Dry run: {dry_run}")
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logger.info("=" * 60)
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# Fetch data from all three sources
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try:
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jira_keys = self.fetch_jira_keys(max_age_days)
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json_keys = self.scan_json_keys()
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parquet_keys = self.scan_parquet_keys()
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except Exception as e:
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logger.error(f"Error fetching data: {e}")
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return {"status": "error", "error": str(e)}
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# Detect discrepancies
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discrepancies = self.detect_discrepancies(jira_keys, json_keys, parquet_keys)
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|
|
missing_in_json = discrepancies["missing_in_json"]
|
|
missing_in_parquet = discrepancies["missing_in_parquet"]
|
|
|
|
# Determine if auto-fix should run
|
|
should_fix = (
|
|
auto_fix and not dry_run and len(missing_in_json) > 0 and len(missing_in_json) <= self.AUTO_FIX_THRESHOLD
|
|
)
|
|
|
|
# Apply fixes if needed
|
|
if should_fix:
|
|
logger.info(f"Auto-fixing {len(missing_in_json)} missing issues")
|
|
|
|
# Backfill missing JSON files
|
|
backfilled, backfill_failed = self.backfill_issues(missing_in_json)
|
|
self.stats["auto_backfilled"] = backfilled
|
|
self.stats["backfill_failed"] = backfill_failed
|
|
|
|
# Transform to Parquet (for issues that were backfilled successfully)
|
|
if backfilled:
|
|
transformed, transform_failed = self.transform_issues(backfilled)
|
|
self.stats["transform_failed"] = transform_failed
|
|
|
|
elif len(missing_in_json) > self.AUTO_FIX_THRESHOLD:
|
|
logger.error(
|
|
f"Found {len(missing_in_json)} missing issues - exceeds threshold "
|
|
f"({self.AUTO_FIX_THRESHOLD}), manual review required"
|
|
)
|
|
|
|
# Fix Parquet transform lag (always safe to re-transform)
|
|
if auto_fix and not dry_run and missing_in_parquet:
|
|
logger.info(f"Transforming {len(missing_in_parquet)} issues with Parquet lag")
|
|
transformed, transform_failed = self.transform_issues(missing_in_parquet)
|
|
self.stats["transform_failed"].extend(transform_failed)
|
|
|
|
# Calculate final stats
|
|
duration = time.time() - start_time
|
|
alert_level = self.get_alert_level(len(missing_in_json))
|
|
|
|
status = "success" if len(self.stats["backfill_failed"]) == 0 else "partial_success"
|
|
|
|
# Build report
|
|
report = {
|
|
"timestamp": datetime.now(timezone.utc).isoformat(),
|
|
"check_type": "incremental" if max_age_days <= 90 else "deep",
|
|
"max_age_days": max_age_days,
|
|
"duration_seconds": round(duration, 2),
|
|
"counts": {
|
|
"jira_api": self.stats["jira_api_count"],
|
|
"raw_json": self.stats["raw_json_count"],
|
|
"parquet": self.stats["parquet_count"],
|
|
},
|
|
"discrepancies": {
|
|
"missing_in_json": missing_in_json,
|
|
"missing_in_parquet": missing_in_parquet,
|
|
"deleted_in_jira": self.stats["deleted_in_jira"],
|
|
},
|
|
"actions": {
|
|
"auto_backfilled": self.stats["auto_backfilled"],
|
|
"backfill_failed": self.stats["backfill_failed"],
|
|
"transform_failed": self.stats["transform_failed"],
|
|
},
|
|
"status": status,
|
|
"alert_level": alert_level,
|
|
}
|
|
|
|
# Save report to file
|
|
report_path = self.config.raw_dir / "_consistency_report.json"
|
|
try:
|
|
# Atomic write using temp file
|
|
fd, temp_path = tempfile.mkstemp(
|
|
dir=report_path.parent,
|
|
prefix=".consistency_report_",
|
|
suffix=".json.tmp",
|
|
)
|
|
os.fchmod(fd, 0o660) # Restore group rw so deploy can access via ACL
|
|
with os.fdopen(fd, "w") as f:
|
|
json.dump(report, f, indent=2)
|
|
os.replace(temp_path, report_path)
|
|
logger.info(f"Report saved to {report_path}")
|
|
except Exception as e:
|
|
logger.error(f"Failed to save report: {e}")
|
|
|
|
# Log summary
|
|
logger.info("=" * 60)
|
|
logger.info("Consistency check completed")
|
|
logger.info(f"Status: {status}")
|
|
logger.info(f"Alert level: {alert_level}")
|
|
logger.info(f"Duration: {duration:.1f}s")
|
|
if missing_in_json:
|
|
logger.info(f"Missing in JSON: {len(missing_in_json)} - {', '.join(missing_in_json[:10])}")
|
|
if self.stats["auto_backfilled"]:
|
|
logger.info(f"Auto-backfilled: {len(self.stats['auto_backfilled'])}")
|
|
if self.stats["backfill_failed"]:
|
|
logger.error(f"Backfill failed: {len(self.stats['backfill_failed'])}")
|
|
logger.info("=" * 60)
|
|
|
|
return report
|
|
|
|
|
|
def main():
|
|
parser = argparse.ArgumentParser(
|
|
description="Jira data consistency monitoring",
|
|
formatter_class=argparse.RawDescriptionHelpFormatter,
|
|
epilog=__doc__,
|
|
)
|
|
parser.add_argument(
|
|
"--max-age-days",
|
|
type=int,
|
|
default=30,
|
|
help="Check issues created in last N days (default: 30)",
|
|
)
|
|
parser.add_argument(
|
|
"--auto-fix",
|
|
action="store_true",
|
|
default=True,
|
|
help="Enable automatic backfill for small gaps (default: True)",
|
|
)
|
|
parser.add_argument(
|
|
"--no-auto-fix",
|
|
action="store_false",
|
|
dest="auto_fix",
|
|
help="Disable automatic backfill (only report discrepancies)",
|
|
)
|
|
parser.add_argument(
|
|
"--dry-run",
|
|
action="store_true",
|
|
help="Only check, don't fix anything",
|
|
)
|
|
|
|
args = parser.parse_args()
|
|
|
|
try:
|
|
config = Config.from_env()
|
|
checker = JiraConsistencyChecker(config)
|
|
report = checker.run_check(
|
|
max_age_days=args.max_age_days,
|
|
auto_fix=args.auto_fix,
|
|
dry_run=args.dry_run,
|
|
)
|
|
|
|
# Exit with error code if there are unfixed issues
|
|
if report.get("alert_level") == "ERROR":
|
|
sys.exit(1)
|
|
elif report.get("status") != "success":
|
|
sys.exit(1)
|
|
|
|
except Exception as e:
|
|
logger.error(f"Consistency check failed: {e}", exc_info=True)
|
|
sys.exit(1)
|
|
|
|
|
|
if __name__ == "__main__":
|
|
main()
|