Sweep operator runbooks (docs/QUICKSTART, docs/HEADLESS_USAGE,
docs/architecture, docs/sample-data, docs/agent-workspace-prompt,
docs/metrics/metrics.yml, dev_docs/server, dev_docs/disaster-recovery),
the corporate-memory service README, the jira connector README + backfill
scripts, the deploy skill, and test docstrings. Replaces `da sync` →
`agnes pull`, `da analyst setup` → `agnes init`, `da metrics ...` →
`agnes catalog --metrics` / `agnes admin metrics ...`, `da fetch` →
`agnes snapshot create`, plus the matching docker-compose admin
invocations.
Vendor-specific `/opt/data-analyst/` install paths in jira backfill /
consistency scripts and operator docs are replaced with the
placeholder `<install-dir>` and a new `AGNES_ENV_FILE` env-var override
that lets a deployment inject its actual install path without a code
change. Aligns with the OSS vendor-agnostic policy in CLAUDE.md.
CHANGELOG `### Internal` entry summarizes the audit and reaffirms the
intentional stale-marker tuples (`_LEGACY_STRINGS`, `_OUR_COMMAND_MARKERS`)
that must keep referencing `da sync` / `da fetch` / etc. for hook upgrade
and override-detection logic.
Move all Jira-specific code into a self-contained connector module:
- 22 files moved via git mv (transform, service, webhook, scripts,
systemd units, tests, docs, bin helper)
- All imports updated to use connectors.jira.* paths
- Jira is now conditional: auto-detected via JIRA_DOMAIN env var
- Webapp registers Jira blueprint only when available
- Health service monitors Jira timers only when enabled
- Profiler loads Jira tables dynamically from filesystem
- Sync settings uses config-driven dependency validation
- Renamed keboola_platform_url -> custom_url in transform
- Updated deploy.sh, sudoers-deploy, backfill_gap.sh paths
- Fixed pytest.ini to skip live tests by default
