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12 commits

Author SHA1 Message Date
ZdenekSrotyr
a2afcfe59a fix(bq-materialize): code-review follow-ups for d8a22996
- tests/test_bq_cost_guardrail.py: assert fail-open warning is logged
  (test previously only proved fail-open doesn't crash; review note:
  warning is the only operator-visible signal of the silent failure).
- extractor._wrap_admin_sql_for_jobs_api: docstring no longer claims
  DuckDB-flavor SQL is rejected — the function performs no inner-SQL
  validation; the v24 migration + register-time validator are the
  real enforcement points.
- extractor.materialize_query: safe_path uses _escape_sql_string_literal
  instead of inline replace, for one-place-to-update consistency.
- extractor: import hashlib hoisted to module-level imports.
2026-05-04 16:52:18 +02:00
ZdenekSrotyr
d8a2299633 fix(bq-materialize): wrap admin SQL in bigquery_query() so views work
Pre-fix, materialize ran the admin source_query as 'COPY (sql) TO parquet'
through the DuckDB BQ extension session. The extension defaults to the
BQ Storage Read API for bq.<ds>.<tbl> references, which rejects views
('non-table entities cannot be read with the storage API'). The fix
always wraps admin SQL into bigquery_query('<billing>', '<inner>') so
COPY uses the BQ jobs API uniformly for tables and views.

Cost guardrail dry-run now operates on the inner SQL (BQ-native), so
the BQ Python client parses it and the cap engages — pre-fix the dry-run
hit 'Table-valued function not found: bigquery_query' and fail-opened.
2026-05-04 16:40:40 +02:00
ZdenekSrotyr
10d7bd62f8 fix(bq): #160 wrap views via bigquery_query() for VIEW/MATERIALIZED_VIEW
Issue #160: da query --remote against query_mode='remote' BQ rows whose
underlying entity is a VIEW or MATERIALIZED_VIEW returned a DuckDB catalog
error because the extractor (with legacy_wrap_views=False default since
the v2 fetch primitives release) skipped master-view creation for those
entity types — but kept inserting the _meta row, leaving operators with a
registered name that resolves to nothing.

Always create a master view for entity types we have proven runtime support
for in this codebase:

  BASE TABLE          → bq."<dataset>"."<source_table>"
                        (Storage Read API path; predicate pushdown)
  VIEW / MAT_VIEW     → bigquery_query('<project>', 'SELECT * FROM `proj.ds.tbl`')
                        (jobs API path; no pushdown — the upcoming /api/query
                        cost guardrail bounds the scan; was the legacy
                        legacy_wrap_views=True branch SQL form, just always-on)

For other entity types (EXTERNAL, SNAPSHOT, CLONE, future), log a warning
and SKIP both the master view AND the _meta row. The registry row remains
intact so /api/v2/scan still works for `da fetch`; we just don't expose a
stale _meta entry that the orchestrator would later strand.

The legacy_wrap_views config knob is still readable in this commit (read
returns the value, which is then ignored). Removal across the rest of
the codebase happens in the follow-up REFACTOR commit.

tests/test_bigquery_extractor.py:
- Add 3 RED tests covering the new always-wrap behavior:
  test_view_creates_wrap_view_with_default_config,
  test_materialized_view_creates_wrap_view_with_default_config,
  test_unsupported_entity_type_skips_meta_and_view.
- Fix pre-existing flakiness in test_main_exits_when_project_missing
  by resetting app.instance_config cache before the no-project mock —
  the prior test populates the cache with a project, and removing the
  legacy_wrap_views get_value() call surfaced this latent ordering bug.
2026-05-04 10:31:35 +02:00
ZdenekSrotyr
85d3810535 feat(materialized): query_mode='materialized' for BigQuery + Keboola — admin SELECT → parquet → analyst
Closes the 'admin pre-stages a curated table/view for analysts' use case end-to-end across both supported source connectors.

Backend (BigQuery + Keboola, schema v20):
  - schema v20 adds source_query TEXT to table_registry (renumbered from v19 after main's #150 RBAC migration also bumped to v19)
  - connectors/bigquery/extractor.py adds materialize_query(table_id, sql, *, bq, output_dir, max_bytes=...) — BqAccess session, dry-run cost guardrail (default 10 GiB, configurable via data_source.bigquery.max_bytes_per_materialize), idempotent ATTACH, rows/bytes/md5 metadata for sync_state
  - connectors/keboola/access.py — new KeboolaAccess facade (parallel of BqAccess) wrapping ATTACH 'keboola://...' AS kbc
  - connectors/keboola/extractor.py adds materialize_query — same shape, no dry-run analog (Keboola Storage API has different cost model); legacy bucket-download path skips query_mode='materialized' rows
  - app/api/sync.py:_run_materialized_pass dispatches by source_type to the right materialize_query
  - app/api/admin.py: RegisterTableRequest accepts source_query; model_validator coheres mode↔source_query↔bucket; PUT preserves omitted fields; deprecation marks (Field(deprecated=True)) on sync_strategy + profile_after_sync (no extractor reads them; profile_after_sync becomes inert — bug from earlier work where /api/sync/trigger never honored the flag); _BQ_OPTIONAL_FIELD_DEFAULTS injects defaults into GET /server-config payload

Operator + CLI surface:
  - da admin register-table --query / --query-mode materialized
  - scripts/smoke-test-materialized-bq.sh — end-to-end smoke for operators

Tests (incl. spike + integration + regression):
  - test_db_migration_v20, test_table_registry_source_query
  - test_bq_materialize, test_bq_cost_guardrail, test_bq_init_extract_skips
  - test_keboola_access, test_keboola_extension_query_passthrough (lock-in for the DuckDB extension capability), test_keboola_materialize, test_keboola_init_extract_skips, test_keboola_materialized_e2e (skipped without KBC_TEST_* creds)
  - test_sync_trigger_materialized, test_sync_trigger_keboola_materialized
  - test_api_admin_materialized, test_cli_admin_materialized
  - test_admin_bq_register, test_admin_discover_bigquery, test_admin_keboola_materialized, test_admin_phase_c_deprecation, test_admin_put_preservation, test_materialized_e2e

Cost: BQ uses bigquery_query() (jobs API, view-aware) — works on tables, views, materialized views uniformly. Keboola uses ATTACH+COPY parquet through the DuckDB extension.
2026-05-01 20:25:56 +02:00
ZdenekSrotyr
1824b9dd9c
feat(admin): #108 M1 — BigQuery table registration in UI + CLI (#119)
Issue #108 Milestone 1. Adds BigQuery table registration via /admin/tables UI and `da admin register-table` CLI without hand-editing table_registry. POST /api/admin/register-table/precheck for round-trip validation. --dry-run flag on CLI. Audit-log entries on register/update/unregister. PUT /api/admin/registry/{id} now preserves registered_at (closes #130).
2026-04-29 13:18:31 +02:00
ZdenekSrotyr
61f6b8d2d5
feat(ci+tests): deploy safety audit — linting, rollback, smoke tests, 50+ new tests (#120)
Comprehensive deploy safety audit implementing 19 improvements across CI/CD pipeline, test coverage, and source code.

### CI/CD Pipeline
- ruff + mypy added to both release.yml and keboola-deploy.yml (continue-on-error)
- Smoke test added to keboola-deploy.yml (was missing)
- Automatic rollback on smoke test failure in release.yml
- Expanded smoke-test.sh with catalog, admin/tables, marketplace.zip, metrics
- Required status checks via .github/settings.yml
- Dependabot + CODEOWNERS + pre-commit hooks + ruff config

### Source Code
- DB schema version check in /api/health (db_schema: ok/mismatch/unhealthy)
- Config versioning (config_version: 1 in instance.yaml, non-blocking validation)
- BigQuery extractor ATTACH error handling (try/except around INSTALL+ATTACH)
- Post-deploy smoke test script for prod VM validation

### Test Coverage (~50 new tests)
- v13->v14 migration, Email magic link TTL, PAT, Marketplace ZIP/Git,
  Jira webhooks, Hybrid Query BQ, Keboola/BQ extractor failure modes,
  Orchestrator failure modes

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-04-29 09:18:55 +02:00
ZdenekSrotyr
2e1dfb7553
feat(v2): claude-driven fetch primitives + 0.14.0 (#102)
Replaces the BigQuery wrap-view pattern with a discovery + scoped-fetch toolkit driven by the analyst's Claude session. Adds /api/v2/{catalog,schema,sample,scan,scan/estimate}, da catalog/schema/describe/fetch/snapshot/disk-info CLI commands, sqlglot-backed WHERE validator, process-local quota tracker, agent rails skill (cli/skills/agnes-data-querying.md). BREAKING: BQ wrap views off by default — set data_source.bigquery.legacy_wrap_views=true for one cycle. Backward-compat field_validator on primary_key. Catalog cache now matches documented 300s TTL with RBAC fresh per request. Cuts release v0.14.0.
2026-04-29 01:07:19 +02:00
ZdenekSrotyr
569cd90d75
fix(security): #81 Group D — extractor-side identifier validation (squashed) (#97)
Closes M15 from issue #81 — SQL injection via attacker-controlled
identifiers in connectors/keboola/extractor.py and
connectors/bigquery/extractor.py.

Lifted _validate_identifier from src/orchestrator.py into a new
src/identifier_validation.py shared module (single source of truth for
both layers). Two validator policies:

- validate_identifier (strict, ^[a-zA-Z_][a-zA-Z0-9_]{0,63}$) for
  table_name — matches the orchestrator's rebuild-time check, so dashed
  names fail fast at extraction rather than being silently dropped.
- validate_quoted_identifier (relaxed, accepts dashes/dots) for
  bucket/dataset/source_table — Keboola in.c-foo and BigQuery
  my-dataset are legitimate, just need to be safe inside `"..."`.

Both extractors skip-and-continue on unsafe rows (logged + counted in
failure stats); _extract_via_extension re-validates as defense-in-depth.

71/71 extractor + orchestrator tests pass.
Refs #81 Group D.
2026-04-27 21:46:17 +02:00
ZdenekSrotyr
1488e01bf9 feat: add temp-file swap to BigQuery extractor
Write to extract.duckdb.tmp, then atomically swap into place with WAL cleanup.
Prevents lock conflicts with orchestrator holding read lock on existing database.
2026-04-09 07:00:19 +02:00
ZdenekSrotyr
1b219cabe9 fix: remove dead PRAGMA enable_wal code
DuckDB has used WAL by default since v0.8, so this pragma is not
valid DuckDB syntax. Removed obsolete try-except block that attempted
to enable WAL on system database initialization.
2026-04-09 06:59:57 +02:00
ZdenekSrotyr
3ba207a7f8 feat: add _remote_attach to BigQuery extractor, support token-less ATTACH in orchestrator
BigQuery extension handles auth via GOOGLE_APPLICATION_CREDENTIALS env var,
so _remote_attach uses empty token_env. Orchestrator now supports both
token-based (Keboola) and env-based (BigQuery) authentication modes.
2026-04-08 18:13:31 +02:00
ZdenekSrotyr
18e5f0b6e8 feat: implement extract.duckdb contract — orchestrator + extractors
Phase 0: extend table_registry schema (v1→v2 migration), add
source_type/bucket/source_table/query_mode columns.

Phase 1: SyncOrchestrator ATTACHes extract.duckdb files into master
analytics.duckdb. Keboola extractor uses DuckDB extension with
legacy client fallback. BigQuery extractor is remote-only via
DuckDB BQ extension (no data download).

62 tests passing.
2026-03-30 20:12:56 +02:00