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17 commits

Author SHA1 Message Date
ZdenekSrotyr
28430ced09
Keboola cutover: native parquet path + sync correctness + auto-discover protection (#190)
* fix: cutover regressions + parallel Keboola legacy fallback

Bundled fixes from a fresh-deploy run on a Keboola Storage backend with
the block-shared-snowflake-access feature flag — DuckDB Keboola
extension's per-table scan can't access bucket schemas, so the legacy
kbcstorage Storage-API client is the only working path.

CUTOVER REGRESSIONS

- agnes pull hash mismatch on every Keboola local-mode table —
  src/orchestrator.py:_update_sync_state stored md5(mtime+size)[:12]
  while the CLI compares against full 32-char content MD5. Now stores
  the same content MD5 the materialized SQL path already used.

- Trailing-slash sanitization in connectors/keboola/access.py and
  extractor.py — DuckDB Keboola extension's ATTACH fails when the URL
  ends in / (canonical form).

- src/profiler.py:TableInfo.description becomes optional — two call
  sites instantiated without it, crashing the profiler pass.

- scripts/ops/agnes-auto-upgrade.sh: chown on UID change — older images
  ran as root, current runs as agnes (uid 999). Reads target uid:gid
  from /etc/passwd inside the new image and chowns ${STATE_DIR},
  /data/extracts, /data/analytics when the digest moves.

- POST /api/sync/trigger is now singleton per process — two
  near-simultaneous trigger calls each forked an extractor subprocess,
  fought for extract.duckdb's file lock, starved uvicorn, flipped the
  container to unhealthy. Trigger now returns 409
  (sync_already_in_progress) when held; _run_sync acquires non-blocking.

PARALLEL LEGACY FALLBACK

- Process pool fan-out for the _extract_via_legacy queue (default 8
  workers, override via AGNES_KEBOOLA_PARALLELISM). Process pool, not
  thread pool, because connectors/keboola/client.py:export_table does
  os.chdir(temp_dir) — process-global, so threads raced and slice files
  landed in the wrong directory ("[Errno 2] No such file or directory:
  '<job_id>.csv_X_Y_Z.csv'").

- Extractor subprocess timeout 1800s -> 3600s (configurable via
  AGNES_EXTRACTOR_TIMEOUT_SEC). 28+ tables × multi-minute Keboola export
  jobs need the headroom on telemetry-class projects.

- Process group cleanup on timeout — Popen(start_new_session=True) puts
  the extractor in its own group. On timeout the parent SIGTERMs the
  group (10s grace) then SIGKILLs stragglers. Without this, the pool
  workers were reparented to PID 1 and continued holding open Keboola
  Storage export jobs. Inline extractor script also installs a SIGTERM
  -> sys.exit(143) handler so the with ProcessPoolExecutor(...) block
  __exit__ runs cleanly.

Tests: existing tests that patched subprocess.run updated to patch
subprocess.Popen with a _FakePopen stand-in (same exit-code-injection
contract). Two tests that exercised the parallel path forced
AGNES_KEBOOLA_PARALLELISM=1 to keep mocks alive (mocks don't ride into
ProcessPoolExecutor subprocesses).

Squashed onto current main (was 7 commits + multi-commit CHANGELOG +
agnes-auto-upgrade.sh conflicts; squash avoids per-commit conflict
resolution against main's flat-mount STATE_DIR refactor and 0.38.0
release cut).

* feat(keboola): Storage API direct extract path; drop extension data path

The DuckDB Keboola extension's COPY routes through Keboola QueryService,
which is unreliable on linked-bucket projects (extension v0.1.6 fixes
that case but isn't yet in the community CDN, and pre-fix any project
with the block-shared-snowflake-access feature flag couldn't see bucket
schemas at all). Move the extract path off the extension entirely and
talk to the Storage API directly via signed-URL download — works on any
project, regardless of extension state.

connectors/keboola/storage_api.py (NEW)
  Lightweight client built on requests.Session. Three endpoints:
  - POST /v2/storage/tables/{id}/export-async        (kicks off job)
  - GET  /v2/storage/jobs/{id}                        (poll until done)
  - GET  /v2/storage/files/{id}?federationToken=1     (signed URL detail)
  - GET  <signed_url>                                 (download bytes)
  Supports sliced exports (manifest + per-slice signed URLs) and gzipped
  payloads. ExportFilter dataclass mirrors the Keboola filter spec
  (whereFilters / columns / changedSince / limit) and handles JSON
  round-trip with the registry's source_query column. Token redaction
  in error messages. Bounded exponential backoff on job polling.
  No cloud-SDK dependency on the data path; thread-safe.

connectors/keboola/extractor.py
  - materialize_query() rewritten: takes bucket/source_table/source_query
    (JSON filter spec), exports via KeboolaStorageClient, converts CSV
    to parquet via DuckDB, atomic os.replace. Same return shape so
    sync.py downstream code stays uniform with the BQ branch.
  - _extract_via_legacy() also moved to Storage API direct (kept the
    name for caller compatibility with _legacy_worker / the parallel
    batch extractor). Per-call temp directories — no os.chdir, threads
    don't race.

app/api/sync.py
  _run_materialized_pass for source_type='keboola' rows now constructs a
  KeboolaStorageClient (replaces KeboolaAccess) and passes
  bucket/source_table/source_query to materialize_query. Reuses one
  client across rows for HTTP keep-alive. Sources keboola URL from env
  too (KEBOOLA_STACK_URL) when instance.yaml doesn't have stack_url
  configured.

cli/commands/admin.py
  discover-and-register defaults Keboola rows to query_mode='materialized'
  (NULL source_query = full table), matching the v26 migration's
  unification of the local/materialized split for Keboola. BigQuery and
  Jira keep their per-source defaults.

src/db.py
  Schema bump 25 → 26. Migration: UPDATE table_registry SET
  query_mode='materialized' WHERE source_type='keboola' AND
  query_mode='local'. NULL source_query on those rows means "full table
  export" — same effective behavior the local mode provided, but now
  via Storage API instead of the extension.

pyproject.toml
  kbcstorage dep stays (admin-side bucket/table list still uses the
  SDK in app/api/admin.py / connectors/keboola/client.py); only the
  data path is migrated off the SDK. Comment updated to reflect the
  new boundary.

tests
  - test_keboola_storage_api.py (NEW, 19 tests): ExportFilter parsing,
    HTTP client (token redaction, retry logic, polling), download_file
    (single, gzipped, sliced), end-to-end export_table_to_csv.
  - test_keboola_materialize.py rewritten: mocks KeboolaStorageClient
    instead of FakeAccess; same atomic-write + zero-rows + unsafe-id
    contracts.
  - test_sync_trigger_keboola_materialized.py: registry rows now carry
    bucket+source_table+JSON-shape source_query.

114+ Keboola-impacted tests green locally.

* test: schema version assertion bumped to 26 alongside the keboola query_mode migration

* fix(keboola): cutover hot-patches surfaced on agnes-dev

Five small fixes that were applied as in-container hot-patches during
agnes-dev cutover and need to be on the source-of-truth image so a fresh
upgrade does not undo them.

- app/api/sync.py: auto-discover gate considers the WHOLE registry (any
  source, any mode), not just rows where source matches and query_mode
  is local. After the v25→v26 keboola materialized migration an
  instance can have 30 materialized rows and zero local rows; the
  previous gate kept re-firing _discover_and_register_tables every
  scheduler tick, creating duplicate auto-discovered rows with the
  wrong bucket prefix every time.

- app/api/admin.py: _discover_and_register_tables reassembles the
  bucket as <stage>.<bucket-id> (e.g. in.c-finance) instead of
  dropping the stage prefix; default query_mode for keboola is now
  materialized (the v26 contract); validator allows NULL source_query
  for keboola materialized rows (full-table export via Storage API
  export-async, no SQL needed).

- cli/commands/admin.py: register-table mirrors the server validator
  (NULL source_query allowed for source_type=keboola); --bucket help
  text generalized to cover both BQ dataset and Keboola bucket id.

- connectors/keboola/extractor.py: max_line_size=64 MiB on
  read_csv_auto so embedded JSON / SQL cells (kbc_component_configuration
  in particular) do not trip the default 2 MiB ceiling.

- connectors/keboola/storage_api.py: GCP backend support — when the
  Storage API returns a manifest whose slice URLs are gs://
  references with a gcsCredentials block, rewrite to the JSON REST
  download endpoint and authenticate with the issued OAuth bearer
  token; redact tokens in any surfaced error string.

* test: align with new keboola materialized + auto-discover-gate contracts

- test_admin_keboola_materialized: rename
  test_register_keboola_materialized_rejects_missing_source_query →
  test_register_keboola_materialized_accepts_missing_source_query.
  v25→v26 introduced 'keboola materialized with NULL source_query
  means full-table export via Storage API export-async' as the
  default registration shape; the rejection case is no longer the
  contract.

- test_sync_filter: add list_all() to _StubRegistry. The auto-discover
  gate in _run_sync now keys off the WHOLE registry (not just local
  rows) so materialized-only Keboola instances do not re-trigger
  discovery on every tick.

* feat(keboola): native parquet export — skip CSV roundtrip

Storage API export-async accepts fileType={csv,parquet}. Switching the
materialized sync to parquet eliminates the CSV → DuckDB COPY → parquet
roundtrip that pinned a single uvicorn worker over 4 GiB on multi-GB
tables (read_csv with all_varchar + max_line_size=64MB has to
materialize the whole CSV in memory before COPY can stream out a
parquet). Snowflake UNLOAD on Keboola's side already produces typed,
self-contained parquet files; the extractor downloads them and renames
into place.

Two cases:

- **Single-file** export (small table): file_info.url points at one
  signed URL; download_file streams chunks straight to .parquet.tmp
  and we're done. No DuckDB.

- **Sliced** export (Snowflake UNLOAD respects MAX_FILE_SIZE — 16 MiB
  default — so anything larger arrives as N parquet slices): each
  slice is a complete parquet file with its own footer; naive concat
  would corrupt them. download_file_slices keeps the slices as
  separate files in a tempdir, then DuckDB COPY (SELECT * FROM
  read_parquet([slice0, slice1, ...])) merges them into one
  consolidated parquet. DuckDB streams row groups during this — peak
  memory bounded to one row group (~1 MiB) regardless of source size.

The legacy CSV path stays as the explicit opt-in via source_query=
'{"file_type":"csv"}' for projects whose backend can't UNLOAD
parquet (none known today; cheap escape hatch). Backward-compat alias
KeboolaStorageClient.export_table_to_csv kept.

Also fixes a latent bug in download_file's gzip detection: previous
heuristic flagged any unencrypted file as gzipped, which would have
corrupted parquet downloads at gunzip time. Name-suffix-only now.

* fix: tempdir leak cleanup, every 0m schedule, /sync/trigger body shapes

Three small self-contained fixes uncovered during agnes-dev cutover.

- connectors/keboola/extractor.py: tempfile.TemporaryDirectory now uses
  ignore_cleanup_errors=True so a worker death mid-write doesn't leave
  multi-GiB stale slice trees on the boot disk. (12 GiB seen after a
  disk-full crash where TemporaryDirectory's own cleanup also raised
  and got swallowed.)

- src/scheduler.py: is_valid_schedule accepts 'every 0m' (interval=0
  = always due). Force-resync of an errored row no longer requires
  waiting out the default 'every 1h' interval — admin can flip the
  schedule, trigger, then flip back.

- app/api/sync.py: POST /api/sync/trigger accepts both ['table_id']
  (legacy bare-array body) and {'tables': ['table_id']} (matches the
  response payload shape, more discoverable for clients building
  requests by hand). Malformed bodies return 422 with a structured
  detail; null/missing means 'sync everything' as before.

Tests cover: tempdir cleanup on raise (sliced parquet path),
is_valid_schedule + is_table_due 'every 0m' acceptance, and trigger
body parametrized matrix (8 valid shapes + 6 rejection cases).

* fix: targeted-trigger filter in materialized pass + auto-upgrade defer

Two operational gaps observed during agnes-dev cutover, in the same
sync-routing area.

- _run_materialized_pass now takes a 'tables' arg and skips rows not in
  the target set with reason='not_in_target'. POST /api/sync/trigger
  with a body of tables previously only scoped the legacy extractor
  subprocess — the materialized pass kept iterating every due
  materialized row, so an admin asking to re-sync kbc_job re-ran
  every other due materialized row alongside it. Match on registry id
  OR name (admins commonly pass either form). tables=None preserves
  the no-filter behavior.

- New GET /api/sync/status (public, no auth) returns {locked: bool}
  off _sync_lock.locked(). agnes-auto-upgrade.sh probes this before
  docker compose up -d and exits 0 with a 'deferred recreate' log
  line if a sync is in flight — the next 5-min cron tick retries.
  Pre-fix, an auto-upgrade triggered mid-sync would recreate the
  uvicorn worker and kill the in-flight extractor / Snowflake-UNLOAD
  download (observed when kbc_job's first 7-day retry got SIGKILLed).
  Connection failures in the probe fall through to the upgrade —
  being stuck on a wedged image is worse than interrupting a
  hypothetical sync.

* fix: auto-discover protects admin overrides + surfaces drift

Two real-world incidents on agnes-dev drove this:

1. kbc_job was registered manually with the correct
   (in.c-kbc_telemetry, kbc_job) coordinates. A naive auto-discover
   re-run would have inserted a SECOND kbc_job row at the slugified
   id 'in_c-keboola-storage_kbc_job' (where Keboola's discovery
   places it) — and that row's Storage API export-async 404s.

2. An earlier auto-discover bug stripped the stage prefix from
   bucket ids ('c-finance' instead of 'in.c-finance'), inserting
   137 rows whose syncs all failed.

Fix:

- _discover_and_register_tables now builds a plan first
  (_build_keboola_discovery_plan) classifying each discovered table
  into one of new / existing_match / existing_drift / invalid, then
  executes only the 'new' bucket. Drift rows are reported with both
  sides of the disagreement plus drift_kind:
  - same_id_diff_coords: registry has the same id but different
    bucket / source_table (admin migrated coords inline).
  - name_collision: discovery's slugified id differs from any
    registry id, but the discovered .name matches an existing row's
    .name (case-insensitive). Catches the kbc_job case.

- Bucket detection now prefers the API's authoritative bucket_id
  field (separate field on the Keboola tables.list response,
  normalised by KeboolaClient.discover_all_tables). Falls back to
  id-string parsing only when bucket_id is missing (older fallback
  path inside discover_all_tables).

- Endpoint POST /api/admin/discover-and-register?dry_run=true
  returns the plan without writing — would_register, drift,
  invalid lists. Lets an operator audit before merging discovery
  with a registry that has admin overrides.

Removed 'every 0m' from test_register_request_rejects_malformed_sync_schedule
— the runtime started accepting it in the previous commit (force-resync
override) and the validator follows suit.

* feat(keboola): AGNES_TEMP_DIR routes tempfiles off overlayfs /tmp

The container's /tmp lives on the boot disk's overlayfs (29 GiB on
agnes-dev, shared with /var). Snowflake UNLOAD of a wide table writes
slices into per-call /tmp tempdirs that fill multi-GiB / many-slice
exports long before the dedicated data disk fills. agnes-dev hit
100% boot-disk while the 20 GiB data disk had 15 GiB free.

connectors.keboola.storage_api.get_temp_root() reads AGNES_TEMP_DIR;
mkdirs the target on first use; unset / empty / unwritable falls
back to None (system tempdir, OSS-pre-fix behaviour). Both
materialize_query (parquet path) and _extract_via_legacy (CSV
fallback) and the sliced-CSV concat path in storage_api use the
helper now.

docker-compose.yml defaults AGNES_TEMP_DIR=/data/tmp on app, scheduler,
and extract services. The data volume is the dedicated disk in
production layouts and a plain docker volume in single-disk
dev/laptop setups — same blast radius as the previous /tmp default
on the latter, no regression.
2026-05-07 12:12:14 +02:00
ZdenekSrotyr
1be997f6d4 feat(caddy): file_server for parquet downloads — bypass uvicorn
A single analyst's multi-GB `agnes pull` held the only uvicorn worker
for the duration of the stream, starving UI / /api/health / every other
API endpoint. Container flipped to `unhealthy`. Triggered while a
6.8 GB `order_economics` pull was in-flight on prod 2026-05-05.

Caddy now intercepts `GET /api/data/{table_id}/download` and serves
the parquet directly via sendfile from the data volume (mounted r-o
at /srv inside the caddy container). RBAC enforced by `forward_auth`
to a new lightweight `GET /api/data/{table_id}/check-access` endpoint
(returns 204 / 403) — the bulk transfer never reaches uvicorn.

Path discovery via `try_files` over the known extract.duckdb v2 source
subdirs. Anything not at a static path falls through to the existing
app handler so legacy `src_data/parquet` and future connectors still
work without a Caddyfile change. Non-Caddy deployments are unchanged.

Stage 1 (multi-worker uvicorn) was considered but blocked by the
single-writer DuckDB lock on system.duckdb — workers > 1 would crash
at startup on "Could not set lock on file", the same race that pushed
the scheduler from in-process writes to HTTP-via-app. Multi-reader
workers + single-writer coordination is out of scope for this PR.
2026-05-05 16:41:33 +02:00
ZdenekSrotyr
c3df03beb3 fix(compose): drop corporate-memory + session-collector services (#176)
**BREAKING** for operators using `COMPOSE_PROFILES=full` or custom
Compose overrides that referenced these stanzas — they're gone in
docker-compose.yml and docker-compose.prod.yml. The scheduler-v2 model
(previous commit) is now the sole driver: every cadence is a job in
services/scheduler/__main__.py:JOBS hitting an admin HTTP endpoint.

Why drop instead of keep behind `profiles: [full]`:
- The previous stanzas were tight `restart: unless-stopped` boot loops.
  When the scheduled run ended (every cycle), Docker re-spawned the
  container, defeating any cadence the service intended.
- The whole point of #176 is that there's now exactly one driver. Two
  drivers (scheduler HTTP + standalone container loop) would race on
  the same /data/user_sessions and knowledge_items writes.
- Removing the stanzas is a louder signal than commenting them out —
  operators upgrading get a clean failure mode (no stale containers),
  not a silently double-driven pipeline.

The Python entry points (services/{corporate_memory, session_collector,
verification_detector}/__main__.py) stay — they're still callable from
the CLI for manual one-shot runs and from the new admin endpoints.

docs/architecture.md updated to reflect the new schedule table.
tests/test_docker_compose.py pins the contract: the two services must
not reappear under either Compose file.
2026-05-04 23:59:44 +02:00
ZdenekSrotyr
5f6bb7a4b2
fix(security+ops) + release(0.12.1): #82 #85 #87 hardening + cut 0.12.1 (#104)
* fix(security+ops): #82 #85 #87 — auth hardening, API validation, deploy posture

Security and operational hardening across three issue groups:

- M23: docker-compose.override.yml → docker-compose.dev.yml (BREAKING, prod foot-gun)
- C13: Container runs as non-root user 'agnes' (USER directive in Dockerfile)
- M21: Docker resource limits (mem_limit, cpus) on app + scheduler
- M22: Caddyfile security headers (X-Frame-Options, X-Content-Type-Options, Referrer-Policy, -Server)
- M17: /api/health split into minimal (unauth) + /api/health/detailed (auth) (BREAKING)
- M26: release.yml restricts build-and-push to main + workflow_dispatch; paths-ignore for docs

- C2: table_id traversal validation on /api/data/{table_id}/download
- M4: Upload streaming (chunk-read + temp file) instead of full-buffer; /local-md hashed filename

- C5: reset_token removed from POST /api/users/{id}/reset-password response
- C8: Startup WARNING when no user has password_hash (bootstrap window visible)
- M9: Audit log on failed web form login (mirrors /auth/token endpoint)
- M10: Atomic magic-link consume via compare-and-swap (CONSUMED: marker + DuckDB conflict catch)

Also: SSRF protection on /api/admin/configure (#46), memory stats SQL aggregation (#90)

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* fix(review): SSRF 169.254.x.x + IPv6 multicast; M10 marker cleanup safety

Review fixes:
- Add 169.254.0.0/16 (link-local, cloud metadata) to SSRF regex — was
  missing, allowing requests to AWS/GCP/Azure metadata endpoints
- Add ff[0-9a-f]{2}: (IPv6 multicast) to SSRF regex
- M10: wrap Step 3 (CONSUMED marker cleanup) in try-except with
  warning log — prevents unhandled exception if DB write fails after
  successful token consumption
- Add test for 169.254.169.254 SSRF rejection

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* fix(review): SSRF IPv6 bypass, CLI health endpoint, upload FD leak

Address Devin Review findings on PR #104:

1. SSRF IPv6 bypass: Replace hostname regex with DNS resolution +
   ipaddress module checks. The old regex patterns like `fe80:` only
   matched up to the first colon, missing real IPv6 addresses like
   `fe80::1`, `fc00::1`, `ff02::1`. The new approach resolves the
   hostname via getaddrinfo and checks each resulting IP against
   ipaddress.is_private/is_loopback/is_link_local/is_reserved/is_multicast.

2. CLI commands broken: `da setup test-connection`, `da setup verify`,
   `da diagnose`, `da status` all called /api/health expecting the old
   format (status=="healthy", services dict). Now they call
   /api/health/detailed for service-level checks (with graceful fallback
   to the minimal endpoint when auth is not configured).

3. Temp file handle leak: _stream_to_temp returns an open
   NamedTemporaryFile; callers now close it before shutil.move() to
   prevent FD leaks until GC.

Also adds IPv6 SSRF test cases (loopback, link-local, unique-local,
multicast) with mocked DNS resolution for test environment independence.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* fix(review): download regex blocks hyphenated IDs; document health split

Address Devin Review round-3 findings on PR #104:

1. _SAFE_IDENTIFIER regex blocked hyphenated table IDs: The download
   endpoint used the strict SQL-identifier regex which does not allow
   dots or hyphens, but Keboola table IDs like in.c-crm.orders
   contain both. Switched to _SAFE_QUOTED_IDENTIFIER which allows dots
   and hyphens while still blocking path-traversal chars (/, .., \)
   and quote/control characters. Added test for hyphenated/dotted IDs.

2. Documented health endpoint split in DEPLOYMENT.md: Added Health
   checks & external monitoring section explaining both endpoints
   (minimal unauth /api/health vs authenticated /api/health/detailed)
   and how to wire external monitoring tools to the detailed endpoint
   with a PAT.

Generated with [Devin](https://cli.devin.ai/docs)

Co-Authored-By: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>

* release(0.12.1): cut hotfix for snapshot integrity + #82/#85/#87 hardening

* fix(security): apply CAS pattern to password reset confirm (#82/M10 follow-up)

Devin review on the rebased PR flagged the asymmetry: magic-link verify
got the atomic compare-and-swap pattern in the original M10 fix, but
password reset confirm at /auth/password/reset/confirm was still using
read-validate-clear. Two concurrent POSTs with the same valid reset
token could both succeed in setting different new passwords (last-write-
wins). Lower severity than the magic-link race because the attacker
would need the reset token AND to race the legitimate user, but the
asymmetry was a polish gap.

Mirrors app/auth/providers/email.py::_consume_token CAS exactly: write
unique CONSUMED:<random> marker via UPDATE...WHERE token=old_token, then
SELECT to verify our marker won, then proceed. Only the winner clears
the marker and applies the password change.

New regression test_concurrent_reset_only_one_wins in
tests/test_password_flows.py::TestResetConfirm pins the contract: two
ThreadPoolExecutor workers + Barrier hit /reset/confirm with the same
token; exactly one gets 302 (password applied), the other gets 200 with
'Invalid or expired'. Sanity-checked against the pre-CAS code — both
POSTs got 302 (race confirmed).

---------

Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>
2026-04-28 19:57:30 +02:00
ZdenekSrotyr
4e4d2a39e6
chore(oss): isolate customer-specific deploy bits from scripts/grpn/ (#88, wave 1) (#94)
* chore(oss): isolate customer-specific deploy bits from scripts/grpn/ (#88)

Vendor-neutralization step before public release. The directory mixed
two concerns: (1) generic ops scripts referenced from mainline OSS
infrastructure (TLS rotation, auto-upgrade cron) and (2) one operator's
hackathon manual-deploy helper with hardcoded GCP project IDs, VM names,
and admin emails. Splitting them per concern.

Moved (still in OSS, just under a vendor-neutral name):
- scripts/grpn/agnes-tls-rotate.sh   → scripts/ops/agnes-tls-rotate.sh
- scripts/grpn/agnes-auto-upgrade.sh → scripts/ops/agnes-auto-upgrade.sh

Removed (belongs in private consumer infra repos, not upstream OSS):
- scripts/grpn/Makefile (hardcoded prj-grp-foundryai-dev-7c37, foundryai-development VM name, e_zsrotyr@groupon.com bootstrap email)
- scripts/grpn/README.md (GRPN hackathon deploy walkthrough)
- docs/superpowers/plans/2026-04-22-grpn-deploy-learnings.md (org-specific deploy log)

Cross-refs updated in README.md, CLAUDE.md, docs/DEPLOYMENT.md,
docker-compose.yml. CHANGELOG entry flags BREAKING (ops) for any
consumer infra repo that installs these scripts via path-based systemd
timers.

This is the first wave of #88 — the remaining leaks (test data with
prj-grp-dataview-prod-1ff9, AIAgent.FoundryAI tags in OpenMetadata test
fixtures, docstrings in connectors/openmetadata/enricher.py) will be a
separate, smaller PR.

Refs #88.

* chore(oss): comprehensive vendor-neutralization (#88 wave 2 + review fixes)

PR #94 review found that the original wave-1 grep was scoped wrong and
many leaks survived. This commit closes wave 1 properly AND folds in all
wave-2 anonymization in a single pass — easier to review than two PRs.

Wave-1 review-fix corrections:
- Caddyfile: scripts/grpn/agnes-tls-rotate.sh → scripts/ops/ (the original
  wave-1 grep filter excluded extensionless files like Caddyfile).
- CHANGELOG bullet rewritten — original wording implied an in-repo migration
  for infra/modules/customer-instance/, which is wrong (the TF module embeds
  the script inline via heredoc, never sourced from scripts/grpn/). Now
  flags downstream consumer infra repos only.
- infra/modules/customer-instance/variables.tf: Czech docstring with `grpn`
  example → English description with `acme, example` placeholders.

Wave-2 anonymization:
- Code docstrings (connectors/openmetadata/{client,transformer,enricher}.py,
  src/catalog_export.py, scripts/duckdb_manager.py): prj-grp-… →
  my-bq-project / prj-example-1234, AIAgent.FoundryAI → AIAgent.MyAgent,
  FoundryAIDataModel → AnalyticsDataModel.
- Test fixtures (4 files): same set of replacements — 157 tests still pass.
- .github/workflows/keboola-deploy.yml: "Groupon-side dev VMs" comment →
  generic "per-developer dev VMs".
- docs/auth-groups.md + scripts/debug/probe_google_groups.py:
  kids-ai-data-analysis project name → acme-internal-prod placeholder.
- 5 planning/spec docs under docs/superpowers/{plans,specs}/2026-04-21-*:
  hardcoded IPs (34.77.94.14, 34.77.102.61) → <dev-vm-ip>/<prod-vm-ip>;
  GRPN/Groupon → Acme/another-customer; prj-grp-… → prj-example-….
- scripts/switch-dev-vm.sh deleted — hackathon-era helper hardcoded to a
  specific shared dev VM. Per-developer dev VMs are the supported pattern.

Final grep `groupon|grpn|foundryai|prj-grp|groupondev|34\.77\.(94|102)\.…|kids-ai-data`
returns zero hits (excluding CHANGELOG.md historical entries).

CHANGELOG entry expanded to document both waves under one bullet, with
the BREAKING (ops) clarification about the TF module being unaffected.

Refs review of #94, closes #88.

* fix(oss): close remaining #94 review-2 findings (Czech, padak refs, CHANGELOG)

Reviewer of PR #94 round 2 caught 4 remaining items the wave-2 pass missed:

1. infra/modules/customer-instance/variables.tf had Czech descriptions on
   8 more variables. Previous review only flagged line 19; this round
   audited the rest. Translated lines 2, 28, 42-46 (heredoc), 60, 65, 71,
   78, 84 to English. Same review concern: a Terraform module that is
   the customer-facing API surface in Czech is unfit for OSS distribution.

2. infra/modules/customer-instance/outputs.tf had Czech descriptions on
   four outputs. Same fix.

3. docs/padak-security.md referenced a private repo (padak/keboola_agent_cli#206)
   in two places. Replaced with generic 'tracked upstream in the auth-CLI repo'
   per CLAUDE.md vendor-agnostic rule (no cross-refs to private repos).

4. scripts/fetch-env-from-secrets.sh:41 had a Czech comment.
   Translated.

5. CHANGELOG cosmetic: bullet said 'AIAgent.FoundryAI -> AIAgent.MyAgent'
   but the actual code uses both MyAgent (in docstrings) and Example
   (in test fixtures). Reworded to mention both targets.

Final grep across all shipping file types (.md, .py, .yml, .yaml, .sh,
Makefile, .json, .tf, .tpl, Caddyfile, .toml) for groupon|grpn|foundryai|
prj-grp|groupondev|34.77.94.14|34.77.102.61|kids-ai-data|padak/keboola_agent_cli
returns ZERO hits (excluding CHANGELOG.md). Czech-diacritic grep across
.tf/.toml/Caddyfile/Makefile/.yml returns ZERO hits.

157/157 OpenMetadata + DuckDB tests still pass.

* fix(oss): close #94 round-3 leaks (env.template, instance.yaml.example, padak typo)

Round-3 reviewer caught two MUST-FIX leaks the round-2 grep missed
(grep was scoped to extensions that did not include .template / .example
suffixes — the audit was right, the previous grep was not paranoid enough):

1. config/instance.yaml.example:114 — '(optional - Groupon-specific)' brand
   leak in a shipping config example. Replaced with '(optional)'.

2. config/.env.template:68 — stale path 'scripts/grpn/agnes-tls-rotate.sh'
   in operator-facing env-template comment. The script lives at
   scripts/ops/ now (commit 16a85cc); this comment had been pointing
   operators at a non-existent path.

3. docs/padak-security.md:188 — phrase duplication 'tracked in tracked
   upstream' from a sloppy substitution in round-2. Trivial wording fix.

Final paranoid grep across .md/.py/.yml/.yaml/.sh/Makefile/.json/.tf/.tpl/
Caddyfile/.toml/.template/.example/.env* with the full token set
(groupon|grpn|foundryai|prj-grp|groupondev|34\.77\.94\.14|34\.77\.102\.61|
kids-ai-data|padak/keboola_agent_cli) returns ZERO hits, excluding
CHANGELOG.md historical entries.

* fix(oss): #94 round-4 — QUICKSTART.md + rename padak-security.md

Devin Review caught two findings on the latest round-3 commit:

1. docs/QUICKSTART.md:67 still pointed users at the deleted
   scripts/switch-dev-vm.sh. A Quickstart user following step-by-step
   would hit a missing-file error at the final step. Replaced with the
   inline gcloud-ssh equivalent that the Removed bullet documents.

2. docs/padak-security.md filename retains the personal identifier
   'padak'. The PR fixed the body content (replaced
   padak/keboola_agent_cli#206 references with generic wording) but
   missed the filename. Renamed to docs/security-audit-2026-04.md
   (date-anchored, vendor-neutral). Updated the historical CHANGELOG
   link to point at the new path with an inline note about the rename.

* fix(oss): redact remaining hardcoded IPs from planning docs + remove default email

Devin Review caught two more leaks:
1. scripts/fetch-env-from-secrets.sh line 16 had a hardcoded
   personal-email default (zdenek.srotyr@keboola.com). Replaced with
   ':?' bash error so SEED_ADMIN_EMAIL must be explicitly set —
   safer than carrying any specific identity.
2. Planning docs still had 35.195.96.98 and 34.62.223.189 (legacy
   prod/dev IPs) that the round-1 IP-replace pattern missed (it only
   targeted 34.77.x.x). Generic regex redaction across all five
   planning docs replaces every public IP with <redacted-ip>,
   preserving private/loopback/IAP ranges.
2026-04-27 20:24:34 +02:00
Petr Simecek
864a245acf
fix(deploy): pass CADDY_TLS through to caddy container (#55)
* fix(deploy): pass CADDY_TLS through to caddy container

PR #52 added the {$CADDY_TLS:default} substitution to the Caddyfile but
forgot to expose CADDY_TLS to the caddy service in docker-compose.yml.
Result: Caddyfile substitution falls back to the default
(`tls /certs/fullchain.pem /certs/privkey.pem`) regardless of what the
operator wrote into .env, and Caddy crash-loops with "open
/certs/fullchain.pem: no such file or directory" on any LE / internal
deployment.

Compose `- CADDY_TLS` (no `=value`) is the bare-form passthrough — Compose
reads the value from .env (or the host shell) at up time. No-op when
CADDY_TLS is unset (Caddyfile default kicks in), exact behavior preserved
for cert-file deployments.

Caught by Keboola's first agnes-dev recreate (kids-ai-data-analysis project,
agnes-dev.keboola.com) — VM came up with .env containing
CADDY_TLS="tls petr@keboola.com" but Caddy ignored it and tried to load
the corp PKI cert file.

* docs(changelog): document the CADDY_TLS passthrough fix per discipline rule
2026-04-26 01:46:42 +02:00
Vojtech
0bbbf3e40b
feat(tls): corporate-CA HTTPS with URL-driven rotation, on-VM CSR gen, self-signed fallback (#51)
Replaces the implicit Let's Encrypt flow with a general corporate-CA HTTPS path:

- Caddy switches to cert-file mode (`tls /certs/fullchain.pem /certs/privkey.pem`) with HSTS + TLS 1.2/1.3 floor
- New `docker-compose.tls.yml` overlay closes host `:8000` when Caddy fronts (no TLS bypass)
- New `scripts/tls-fetch.sh` — generic URL fetcher for `sm://`, `gs://`, `https://`, `file://` with redirect refusal + PEM validation
- New `scripts/grpn/agnes-tls-rotate.sh` — daily rotation, self-signed fallback against same key (zero key churn), on-VM RSA-2048 + CSR auto-gen, atomic swap, SIGUSR1 reload
- `scripts/grpn/agnes-auto-upgrade.sh` becomes cert-aware (auto-enables tls overlay when certs present)
- Compose profile `production` renamed to `tls` (aligns with DEPLOYMENT.md and infra startup)

Pairs with FoundryAI/agnes-the-ai-analyst-infra#27 (merged) which wires per-VM `local.vm_tls`, writes `TLS_*` env vars into `.env`, auto-creates Secret Manager containers for `sm://` privkey URLs, and installs `agnes-tls-rotate.{service,timer}` for daily polling.

Includes hardening + docs follow-ups from code review:
- `TLS_CSR_SUBJECT` env-var parametrisation applied to both CSR and self-signed cert paths
- curl `--max-redirs 0 --proto '=https'` + post-fetch PEM validation in `tls-fetch.sh`
- `ulimit -c 0` + array-form `COMPOSE_FILES` (POSIX-safe, bash 3.2 compatible)
- TLS section added to `config/.env.template`
- Historical-note headers in `docs/superpowers/{plans,specs}/2026-04-09-*.md` flagging the profile rename
2026-04-25 19:51:25 +00:00
ZdenekSrotyr
1381770057
fix(auth): uvicorn --proxy-headers + Google OAuth doc + vendor-agnostic OSS rule in CLAUDE.md (#39)
* fix(compose): pass --proxy-headers to uvicorn so OAuth callbacks resolve to https

When the app runs behind a reverse proxy (Caddy, nginx, Cloudflare Tunnel),
uvicorn's default policy of trusting X-Forwarded-* only from 127.0.0.1 means
the request the container sees still looks like http://localhost:8000/...,
even when the user is on https://. The OAuth provider then sends Google a
callback URL Google has never seen — Error 400: redirect_uri_mismatch.

--proxy-headers + --forwarded-allow-ips '*' tell uvicorn to honor those
headers from any source. The container only ever sees its own docker network
anyway; trusting it everywhere is safe in this deployment shape.

Adds docs/auth-google-oauth.md with the full operator gotcha list — env
vars that have to be set, instance.yaml fields that silently fall back to
defaults, and the DB workaround for ad-hoc role promotion when
SEED_ADMIN_EMAIL was missed on first boot.

* docs(claude): codify vendor-agnostic OSS rule for AI agents and humans

Adds a "Vendor-agnostic OSS" section to CLAUDE.md spelling out what cannot
land in this repo (specific deployments, internal hostnames/projects, cross-
references to private repos, customer-specific paths) and how to phrase
abstractions instead. Plus a pre-PR grep checklist in the existing "Git
Commits & Pull Requests" section.

This trips up agents and humans alike — the previous version of #39 had
private-deployment references in the body and a customer domain in a doc
example. Surfacing the rule once in the file every Claude/Cursor/Aider
session reads should prevent that on the next PR.

* docs(oauth): cover DOMAIN + SERVER_URL env vars introduced by PR #48

PR #48 (merged) added DOMAIN-gated Secure cookie in google.py and
documented SERVER_URL in .env.template, but this operator doc was
drafted before that merge and didn't reference either variable.
Adding both to the env table and extending the common-failure-modes
table with a sticky-cookie / redirect-URI-mismatch entry that
references SERVER_URL as the host-header-independent fix. Also
aligns the compose command snippet with the `='*'` syntax that
actually ships on main post-PR #48.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Vojtech Rysanek <vrysanek@groupon.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-24 07:07:33 +00:00
ZdenekSrotyr
9e19fb5219
chore(deploy): trust proxy headers + document HTTPS env vars (#48)
* chore(deploy): trust proxy headers + document HTTPS env vars

- uvicorn: add --proxy-headers --forwarded-allow-ips='*' so the app honors
  X-Forwarded-Proto/Host from a TLS-terminating reverse proxy (Caddy,
  Cloudflare Tunnel, nginx, LB). Without this the app saw every request as
  plain HTTP and built redirect/OAuth URLs from the raw Host, which is
  fragile behind a proxy.
- .env.template: document DOMAIN (enables Secure cookie flag) and new
  SERVER_URL (deterministic base URL for OAuth callbacks and external
  links). Grouped under a dedicated HTTPS / REVERSE PROXY section.

* chore(deploy): add proxy header flags to Dockerfile CMD and Kamal config

Matches the docker-compose changes so non-compose deployments (docker run,
Kubernetes, ECS, Kamal) also trust X-Forwarded-Proto/X-Forwarded-For.

* fix(auth): align Google OAuth cookie Secure flag with password/email providers

Google OAuth set the access_token cookie Secure flag based on the TESTING env
var, while password and email providers use DOMAIN. This meant the DOMAIN
env var (now documented in config/.env.template) did not actually control
Secure for Google cookies. Align all three providers on DOMAIN so the
documented behavior holds consistently.
2026-04-24 08:52:53 +02:00
ZdenekSrotyr
6c53082295 feat: multi-instance deployment — all 14 must-have items from spec
CalVer CI (release.yml) with stable/dev channels, health endpoint
with version/channel/schema_version, JWT secret auto-generation with
file persistence, smoke test script + Docker-in-CI, pre-migration
snapshot, /api/admin/configure for headless setup, /api/admin/
discover-and-register, /setup wizard, OpenAPI snapshot test, custom
connector mount support, CHANGELOG, migration safety tests, startup
banner.

663 tests pass (6 new migration safety + 3 OpenAPI snapshot + 1
updated JWT test).
2026-04-10 11:57:42 +02:00
ZdenekSrotyr
d814eaa503 feat: add Caddy HTTPS reverse proxy and production compose override 2026-04-09 16:39:23 +02:00
ZdenekSrotyr
510e1a8178 fix: add restart policy and config mount to app, scheduler, extract services 2026-04-09 16:38:58 +02:00
ZdenekSrotyr
9e5066cf1d feat: replace Docker healthcheck with curl 2026-04-09 07:03:12 +02:00
ZdenekSrotyr
92fbb88c15 chore: Docker prod config (Python 3.13, no reload), fix utcnow deprecation, update docs 2026-04-08 12:10:47 +02:00
ZdenekSrotyr
4bad893cb8 feat: Docker services (ws-gateway, corporate-memory, session-collector) + scheduler auto-auth 2026-04-08 07:04:26 +02:00
ZdenekSrotyr
9fef90a729 docs: rewrite CLAUDE.md for extract.duckdb architecture
Update project structure, architecture diagram, key implementation
details, development commands, and extensibility docs.
Add extract service to docker-compose.yml for one-shot extraction.
2026-03-31 07:52:44 +02:00
ZdenekSrotyr
3701130a11 feat: add Docker, CLI tool, scheduler, and agent skills
- Dockerfile (uv-based) + docker-compose.yml (3 services)
- CLI tool 'da' with commands: auth, sync, query, status, admin, diagnose, skills
- Scheduler sidecar service (replaces systemd timers)
- pyproject.toml for uv distribution
- Built-in skills (setup, troubleshoot) for AI agents
- 17 CLI tests, 75 total tests passing
2026-03-27 15:30:03 +01:00