refactor: consolidate deps into pyproject.toml, remove requirements.txt

- All dependencies now in pyproject.toml [project.dependencies]
- Dev/test deps in [project.optional-dependencies] dev and [tool.uv]
- Dockerfile uses uv pip install . from pyproject.toml
- CI uses uv pip install ".[dev]"
- Deleted requirements.txt and requirements-dev.txt
- Updated README, CLAUDE.md install instructions
- Enhanced .dockerignore (exclude tests, docs, infra from image)

.dockerignore

@@ -1,4 +1,5 @@
 .git
+.github
 .venv
 venv
 __pycache__
@@ -13,5 +14,11 @@ build/
 .pytest_cache
 .mypy_cache
 .claude/
+.idea
 node_modules/
+tests/
+docs/
+dev_docs/
+infra/
+server/
 docs/ZS_PADAK_*

.github/workflows/ci.yml

@@ -20,7 +20,7 @@ jobs:
         uses: astral-sh/setup-uv@v5
 
       - name: Install dependencies
-        run: uv pip install --system -r requirements-dev.txt
+        run: uv pip install --system ".[dev]"
 
       - name: Run tests
         run: pytest tests/ -v --tb=short

.github/workflows/deploy.yml

@@ -18,7 +18,7 @@ jobs:
         uses: astral-sh/setup-uv@v5
 
       - name: Install dependencies
-        run: uv pip install --system -r requirements-dev.txt
+        run: uv pip install --system ".[dev]"
 
       - name: Run tests
         run: pytest tests/ -v --tb=short

CLAUDE.md

@@ -123,7 +123,7 @@ Table definitions: DuckDB `table_registry` table in `system.duckdb`.
 ```bash
 # Setup
 python3 -m venv .venv && source .venv/bin/activate
-uv pip install -r requirements.txt
+uv pip install ".[dev]"
 
 # Run FastAPI locally
 uvicorn app.main:app --reload

Dockerfile

@@ -8,13 +8,12 @@ COPY --from=ghcr.io/astral-sh/uv:latest /uv /usr/local/bin/uv
 
 WORKDIR /app
 
-# Copy dependency files first for layer caching
-COPY requirements.txt .
-RUN uv pip install --system --no-cache -r requirements.txt
-
 # Copy application code
 COPY . .
 
+# Install production dependencies from pyproject.toml
+RUN uv pip install --system --no-cache .
+
 # Default: run FastAPI server
 EXPOSE 8000
 CMD ["uvicorn", "app.main:app", "--host", "0.0.0.0", "--port", "8000"]

README.md

@@ -80,7 +80,7 @@ curl -X POST http://localhost:8000/api/sync/trigger
 python3 -m venv .venv && source .venv/bin/activate
 
 # Install dependencies
-uv pip install -r requirements.txt
+uv pip install ".[dev]"
 
 # Run FastAPI locally with hot reload
 uvicorn app.main:app --reload

pyproject.toml

@@ -1,9 +1,10 @@
 [project]
-name = "data-analyst"
+name = "agnes-the-ai-analyst"
 version = "2.0.0"
-description = "AI Data Analyst — data distribution platform for AI analytical systems"
-requires-python = ">=3.9"
+description = "Agnes — AI Data Analyst platform for AI analytical systems"
+requires-python = ">=3.11"
 license = "MIT"
+readme = "README.md"
 
 dependencies = [
     # Core database
@@ -13,6 +14,7 @@ dependencies = [
     "uvicorn[standard]>=0.32.0",
     "python-multipart>=0.0.9",
     "jinja2>=3.1.0",
+    "starlette>=0.41.0",
     # Authentication
     "PyJWT>=2.8.0",
     "itsdangerous>=2.1.0",
@@ -37,19 +39,32 @@ dependencies = [
     # Profiler visualizations
     "matplotlib>=3.8.0",
     "numpy>=1.24.0",
-    # Sample data generation
+]
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=9.0.0",
+    "pytest-timeout>=2.0.0",
     "faker>=24.0.0",
+    "anthropic>=0.30.0",
+    "openai>=1.30.0",
 ]
 
 [project.scripts]
 da = "cli.main:app"
 
-[project.optional-dependencies]
-dev = [
-    "pytest>=7.0.0",
-    "pytest-mock>=3.0.0",
-]
-
 [build-system]
 requires = ["hatchling"]
 build-backend = "hatchling.build"
+
+[tool.hatch.build.targets.wheel]
+packages = ["app", "src", "connectors", "cli", "services", "config"]
+
+[tool.uv]
+dev-dependencies = [
+    "pytest>=9.0.0",
+    "pytest-timeout>=2.0.0",
+    "faker>=24.0.0",
+    "anthropic>=0.30.0",
+    "openai>=1.30.0",
+]

requirements-dev.txt

@@ -1,4 +0,0 @@
--r requirements.txt
-faker>=24.0.0
-anthropic>=0.30.0
-openai>=1.30.0

requirements.txt

@@ -1,42 +0,0 @@
-# Core database
-duckdb>=0.9.0
-
-# Web framework (FastAPI)
-fastapi>=0.115.0
-uvicorn[standard]>=0.32.0
-python-multipart>=0.0.9
-jinja2>=3.1.0
-
-# Authentication
-PyJWT>=2.8.0
-itsdangerous>=2.1.0
-authlib>=1.3.0
-argon2-cffi>=23.1.0
-
-# HTTP client
-httpx>=0.27.0
-
-# CLI
-typer>=0.12.0
-rich>=13.0.0
-
-# Configuration
-python-dotenv>=1.0.0
-pyyaml>=6.0
-
-# Data processing
-pandas>=2.0.0
-pyarrow>=12.0.0
-pytz>=2024.1
-
-# Data source connectors
-kbcstorage>=0.9.0
-google-cloud-bigquery>=3.0.0
-google-cloud-bigquery-storage>=2.0.0
-
-# Profiler visualizations
-matplotlib>=3.8.0
-numpy>=1.24.0
-
-# Testing
-pytest-timeout>=2.0.0